PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.QBS8R
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 307aa    MW: 34616.3 Da    PI: 8.2646
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.QBS8RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-174997148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl
      Aradu.QBS8R 49 KGPWSPEEDAKLKSYIEQHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 97
                     79*********************************************97 PP
2Myb_DNA-binding38.13.6e-12104146246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
      Aradu.QBS8R 104 GSFSEEEDNIICTLYVSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 146
                      78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4674497IPR017930Myb domain
SuperFamilySSF466898.77E-2746144IPR009057Homeodomain-like
SMARTSM007175.4E-134899IPR001005SANT/Myb domain
PfamPF002495.1E-164997IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2550104IPR009057Homeodomain-like
CDDcd001674.47E-105197No hitNo description
PROSITE profilePS5129422.67998152IPR017930Myb domain
SMARTSM007171.4E-11102150IPR001005SANT/Myb domain
PfamPF002495.8E-11104146IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-24105152IPR009057Homeodomain-like
CDDcd001673.70E-8105148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
RLFLSLLVPL PLTLVAFYIY KEHPSLPTYQ LREREMGRAP CCDKANVKKG PWSPEEDAKL  60
KSYIEQHGTG GNWIALPQKI GLKRCGKSCR LRWLNYLRPN IKHGSFSEEE DNIICTLYVS  120
IGSRWSIIAA QLPGRTDNDI KNYWNTRLKK KLLAKQRKLD QPPPIPYCNS SSNSSSSSSS  180
VPQLVVPPAP PSIHDYDFTS LISSFPQQHH LYPPPNMYHH QQGFESLLID DDLSHLMACV  240
VSNNQQMEVQ QGFYGSTTST ESTTTTSWGP DMTSLVNYSS SPPPPPPPLL YQDDASPASR  300
YFGMQML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25491527108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.QBS8R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0974031e-114BT097403.1 Soybean clone JCVI-FLGm-16K1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963766.10.0transcription factor RAX3
TrEMBLA0A444WUE71e-173A0A444WUE7_ARAHY; Uncharacterized protein
STRINGAES944913e-87(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-76myb domain protein 84