PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.P8I3R
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 417aa    MW: 48518.4 Da    PI: 10.4162
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.P8I3RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.37.9e-1634123291
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                   Y+++++  GF ++k    k   +g+ ++r f  ++ g r+e++ +  ++++ +r+et t+C akl + +++ + +w+v k+ l+HnHel+p
  Aradu.P8I3R  34 IYSKFGRCHGFGMCKGDYGKD--EGNLIRRMFFGNRAGLRDEKHLNrMDRKKGHRPETSTNCMAKLSIYLDRkNLTWKVRKVILDHNHELTP 123
                  7***************98877..8899***************998845667779****************99899**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.3E-1434123IPR004330FAR1 DNA binding domain
SuperFamilySSF577562.3E-5333369IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MRIATRWKEA KGMRGVEQGI MRKVFQSEKI AYDIYSKFGR CHGFGMCKGD YGKDEGNLIR  60
RMFFGNRAGL RDEKHLNRMD RKKGHRPETS TNCMAKLSIY LDRKNLTWKV RKVILDHNHE  120
LTPRGMVHMI SKFRRHSILE LMQNLELVVQ EYYNNELVAQ FNSIYSTPAL TMCLDPVEMC  180
VVDVYTRAIF VLVKKETDGV GAINFVSKRR VSTTMEKEGF PCRLMFFVMK HKHLKDILSR  240
LILKRWKRGA KAIKEYVDDM LSERGFLLRH GTLHVVSQWM LYLGSKNRTV FKNVMEGIRG  300
ICTNIHARLG QPNEGRKANV DEDVWDPVVV RTKGTPRSKS KKEKKRRCTF CKRTGHTKRT  360
CLDRVPNRSK WGLQEDEKSI ERSGANEERI VETAQSEIVA FVADAGTCDY HQQVLNF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.P8I3R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025642279.11e-147protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A445C5D31e-147A0A445C5D3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1402023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-07FAR1-related sequence 5