![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.P5ZA9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 498aa MW: 56622.1 Da PI: 7.2475 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 45.1 | 3.4e-14 | 126 | 201 | 1 | 72 |
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek 72 ++Yne++ + GFsv++sk ++ +g+i+++ fvCs+eg+r+ ++ + +++++ +r+ tr+ C+a++kv+ ++ Aradu.P5ZA9 126 DYYNEFGCMKGFSVKRSKVGRRtkqGAEGKIIWQIFVCSREGERDGKHMHrEDRKKDPRPITRCRCEARIKVHIDD 201 69*************998766633367889**************99988846677789**************9775 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.5E-12 | 126 | 200 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 498 aa Download sequence Send to blast |
MVRKQRSRSD YLEVQIREGN GPPRATKFTS TLCQCRLGFY RPIISGEACA EIDFNWGDAD 60 DGMSGETVPE EEVEAMDSSV ADADIDAEAA VRIVDGIGSF GAIEFSSLTA KDVLTTEFTS 120 LQAAYDYYNE FGCMKGFSVK RSKVGRRTKQ GAEGKIIWQI FVCSREGERD GKHMHREDRK 180 KDPRPITRCR CEARIKVHID DASGAVKEGD LHQINSIRKS GLQVPTIFRA FANQSGGFET 240 VGFETIWTDS VVDHGLEDHP WIVDMYSKKH SWSNAHIREK FFAGLKTTSR RRELVANYKS 300 TYGEPVVKTK LEAIEQFAAT VYTREVFELF QEVLMLASNI RVVSTKRTSV GVLFEVAMYC 360 KQISWAVSWA EEDDEFSCFC QRMESFGLSC VHMRAKQSRA PCDGTRVGEI SDAAYMSMHT 420 TMLDDYRELV SLSCQFFEDY VDVKTWLAKE HQSLRDKHRQ RLDVAEEASR VSLRDPMRAR 480 YKGCGRRVVT SRGKFCRV |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.P5ZA9 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015934909.1 | 1e-147 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445D9E8 | 1e-154 | A0A445D9E8_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13819 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G06250.1 | 2e-12 | FAR1-related sequence 7 |