PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.NP2P2
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 499aa    MW: 57406.1 Da    PI: 9.2337
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.NP2P2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.31.3e-1868154191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cs+egk +++ +    +++t+++   +C a++ +   k  g w ++k++l+H+H+++p
  Aradu.NP2P2  68 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQSITCSREGKWKSKISP---TEKTNPTASLNCPARIYIYTLKdVGAWIISKVVLDHSHPCCP 154
                  6****************98887..888**************998877...8999*************9877769***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-1668154IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.174313349IPR007527Zinc finger, SWIM-type
PfamPF044349.7E-5315346IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4324351IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MDDSTSDYQL NQGEVDYEFE SNVVIETLGC RSDFLGVFFV EAWPLSVVDD QFVLKVEMTF  60
TTLEDVEKFY RNYAKAAGFS TRVRSTNRKG NEIKNQSITC SREGKWKSKI SPTEKTNPTA  120
SLNCPARIYI YTLKDVGAWI ISKVVLDHSH PCCPSKAEML KQHRKLSMSI RRTIENNEEA  180
DRHIWVPIYL DHNFWTGMRS TQRSESMHSF FNKFITQNSS LIQFVKKYDN CLRSREQAER  240
ESDAADFYTV IPCATKSSIE AQFQDMYTHQ KFREVQAQLR GKANCITRLT NSALGYSVYE  300
VREQVSSSIF NKFVVTYDSV AADVKCQCLL FESRGILCRH ALSVLSFEQV SQVSPRYILE  360
RWSKKVKRRH THIKSSHNEP LLEPRSKRFD ELVFRSQNVC EFASESKELT AILHRAYGTV  420
MVEMKELKAK RKGTSSLSHE DANLKSIKNA SKKKKTKALN ELNFFDVGSM VHSNSSQYQG  480
RVMNYQFRVS AAADNSLGI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.NP2P2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.10.0protein FAR-RED ELONGATED HYPOCOTYL 3-like
RefseqXP_020997233.11e-180protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.24e-32far-red elongated hypocotyls 3