PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.NL1HL
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 563aa    MW: 63834.9 Da    PI: 5.122
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.NL1HLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1705.6e-22143233290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  fY+ YAk+ GF vrk+k +++ rn+ it+++fvC ++g+r   + +   +++++++aetr+gC+a+++v+ ++ +g+w ++ ++  HnHe+ 
  Aradu.NL1HL 143 FYSLYAKMNGFAVRKNKIRRNVRNE-ITQQEFVCFRQGFRGMGSVNygMRHKHEPKAETRCGCEAEMRVHVHSeSGRWIISYFQDFHNHEML 233
                  9*******************97776.***************9998887889999*****************999***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-19143233IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.507379415IPR007527Zinc finger, SWIM-type
SMARTSM005750.0032390417IPR006564Zinc finger, PMZ-type
PfamPF044341.3E-4391413IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MIDVKTKLPN SDTIDLHYFL GVQEAKIKGV FAVMSVNAIS AQDCMEEESA VDECYRPLSA  60
EEKGGDGTDA FGPGGDEFGD EVDDGELGVK SDAEENFGDS FFDNWEERAV DGVAELRCVN  120
FKEITAKESM MCHFLDRSVA FLFYSLYAKM NGFAVRKNKI RRNVRNEITQ QEFVCFRQGF  180
RGMGSVNYGM RHKHEPKAET RCGCEAEMRV HVHSESGRWI ISYFQDFHNH EMLDDRLTFM  240
LPGHRKMDAA ALEQMNMMLR VGIKTPQIYS SFVQTAGGFQ NLPFLKRDMD FVEQFMRCIS  300
QMRSREAHSD LLSVVGEPVL QSPFHDLERS AAKKLTRAIF FNFRPMFFRA CTPKVRTHTW  360
TQTSDTFTLC RSANVRREWQ VCHYSDSNSF KCSCLRMESL GIPCDHIVAV LSCSRSLVQE  420
CSPCRNEAEF ADMTDKVLHE IAQLKEIEDS GDVVGLNEVG EASTLEGCVR DPQLVRCQKR  480
QRKETVKGVK RCGLCRQRGH NQVSCHLNPN SRMNTQEGAS YFGGEGEGET GTMEDSSEEE  540
ELLTWDDAAD LALDEGYDSQ GRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.NL1HL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015964117.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445ARC30.0A0A445ARC3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3613639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-15FAR1-related sequence 5