PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.NG3QM | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 541aa MW: 62667.2 Da PI: 6.6715 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.5 | 1.7e-21 | 68 | 159 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFsvrk++s+ s + g i+kr+fvC+++g++ ++k++ +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel Aradu.NG3QM 68 EYYGNFARKNGFSVRKERSRVSPQLG-IYKRDFVCYRSGFAPVKRKANGEQHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSNIHNHELL 159 59********************8888.******************999**********************99877789*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.0E-19 | 68 | 159 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 10.014 | 413 | 448 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.0E-8 | 420 | 447 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 7.3E-6 | 423 | 450 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 541 aa Download sequence Send to blast |
MTSIPSKNLW IRRQQCPCGD WKCYITYEGD SDEGSRAEEL VKAEKASSGA MITPYVGMVF 60 KSDDEAFEYY GNFARKNGFS VRKERSRVSP QLGIYKRDFV CYRSGFAPVK RKANGEQHRD 120 RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNIHNHELLE DDQVRLLPAY RKIHEADQER 180 ILLLSKAGFP IHRIVKMLEL EKGIQGGQLP YLERDVRNFV QNRKKVVQEN EALLSEKREN 240 DLSELLEACK AMKEVDVDFV YDFTVDENDK WRDMISVFGF GSDKHIGLLY SVRASWAQSY 300 VRGYFLARMS TIAYSKSIDA FLKGIFAAQT CLRSFFEQIG ISANIQHQAH QETHYMHLKT 360 CIPVEEHARS ILTPFAFNAL QQELLLAMQY AASDMANGSY IVRHFKSMDG ERLVIWLAED 420 EQIHCSCKEF ESSGILCRHA LRVFILKNYF QLPDKYYLSR WRRECTLLID DDHNNQITDG 480 EWFQEYQSLA ETLFSESSIT KERSDYARSE LTKELTRILN EVRNLPDTDG VLMNMTVSPT 540 S |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.NG3QM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028943522.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 isoform X2 | ||||
Swissprot | Q9LKR4 | 1e-124 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | A0A0B0N6E8 | 0.0 | A0A0B0N6E8_GOSAR; Far1-related sequence 10-like protein | ||||
STRING | POPTR_0016s00900.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF594 | 30 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 1e-119 | FAR1-related sequence 10 |
Publications ? help Back to Top | |||
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