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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.N8F6V | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 363aa MW: 40163.1 Da PI: 9.5743 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 145.6 | 2.6e-45 | 18 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 + pGfrF Ptd+el+++yL+kk++g++ ++ ++i+e++++++ePwdLp k++ ++++ew+fFs+r +ky++g++++ratk+gyW+ t ++++++s ++ Aradu.N8F6V 18 MFPGFRFCPTDHELISYYLRKKLDGDEDSV-QIISELELCTFEPWDLPeKSFIKSNDEWFFFSRRGRKYPNGSQNKRATKHGYWRVTCNERQIKS-GQ 113 579************************999.89***************656656778**************************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++g+k+tLvf+ grapkg++t+W++hey + Aradu.N8F6V 114 NVIGTKRTLVFHVGRAPKGQRTEWIIHEYCI 144 9****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-51 | 10 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.178 | 18 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-23 | 20 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MVDRDSSGAH MSIAASSMFP GFRFCPTDHE LISYYLRKKL DGDEDSVQII SELELCTFEP 60 WDLPEKSFIK SNDEWFFFSR RGRKYPNGSQ NKRATKHGYW RVTCNERQIK SGQNVIGTKR 120 TLVFHVGRAP KGQRTEWIIH EYCINDKFQD SLVVCRLKRN TKFHASDSSN KALRKSGGGV 180 SEGVTVQRST CVPIQDRSNK TSCKSSASRK SSCGVSEGIT IQRSTCAPIQ DRSNKASRKS 240 SSSRKSSCGV SKGVTVQRST CVLIQDRINK ASRKNCCGVS EEGVTVQRST CVPIQDKEVG 300 CSSKKGNNNN SSPSTTAQIE SSRIVANEAN PKASSGHSKV VDEVGYYAEI NLVDIINLDE 360 TAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-40 | 8 | 159 | 1 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-40 | 8 | 159 | 1 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-40 | 8 | 159 | 1 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-40 | 8 | 159 | 1 | 164 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-40 | 8 | 159 | 1 | 164 | NAC domain-containing protein 19 |
4dul_B | 4e-40 | 8 | 159 | 1 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.N8F6V |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015965959.1 | 0.0 | NAC domain-containing protein 40-like | ||||
Refseq | XP_025700439.1 | 0.0 | NAC domain-containing protein 40 | ||||
TrEMBL | A0A445D4K1 | 0.0 | A0A445D4K1_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA13G39090.2 | 1e-95 | (Glycine max) | ||||
STRING | XP_007150048.1 | 9e-97 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7315 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27300.1 | 1e-80 | NTM1-like 8 |