PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.MSL3N
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 311aa    MW: 35514.3 Da    PI: 5.0034
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.MSL3NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+ +v+++G+ +W+  ++  g+ R++k+c++rw +yl
      Aradu.MSL3N 16 KGTWTPEEDRKLIAYVTRYGSWNWRQLPKFAGLARCGKSCRLRWMNYL 63
                     799*******************************************97 PP
2Myb_DNA-binding58.21.9e-1869113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eE+  +++++ +lG++ W++Ia++++ gRt++++k++w++ 
      Aradu.MSL3N  69 RGNFTQEEEACIIKLHSKLGNR-WSAIAAELP-GRTDNEIKNHWHTT 113
                      89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-23866IPR009057Homeodomain-like
PROSITE profilePS5129417.2571163IPR017930Myb domain
SuperFamilySSF466895.03E-3013110IPR009057Homeodomain-like
SMARTSM007177.6E-111565IPR001005SANT/Myb domain
PfamPF002492.6E-141663IPR001005SANT/Myb domain
CDDcd001675.00E-91863No hitNo description
PROSITE profilePS5129427.3164118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2667117IPR009057Homeodomain-like
SMARTSM007171.9E-1768116IPR001005SANT/Myb domain
PfamPF002491.1E-1669113IPR001005SANT/Myb domain
CDDcd001672.12E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
GKMVRTPSCD KSGLRKGTWT PEEDRKLIAY VTRYGSWNWR QLPKFAGLAR CGKSCRLRWM  60
NYLRPNLKRG NFTQEEEACI IKLHSKLGNR WSAIAAELPG RTDNEIKNHW HTTLKKRFQT  120
NEEESKPKET TQISAESNTT TTSPLSPLSS SSEFSSRTSW DQSHNNNNNN KNNLVLEDDD  180
FAFLDGSFWT EPYLAEILHE QETVVTVPSS TSNVFDPCEI SVANENEELE LSSNNSTSSL  240
FDLEKEFGSF LIEPTMMESF WTQPCVSESD DVSHIPFMPP SSEYFTTLCG SDPWSTPSTT  300
HLYDQHLSLF H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141205110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.MSL3N
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0990770.0DQ099077.1 Arachis stenosperma clone AS1RN10F09 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015953501.10.0transcription factor MYB14
SwissprotQ9SJX85e-63MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A445E0F40.0A0A445E0F4_ARAHY; Uncharacterized protein
STRINGGLYMA12G11390.13e-95(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.14e-58myb domain protein 15
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]