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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.MF2V4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | YABBY | ||||||||
Protein Properties | Length: 213aa MW: 23853.8 Da PI: 6.348 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 163.2 | 2e-50 | 10 | 164 | 2 | 167 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvv.tvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 +vf+ +e++CyvqC+ C+ il+v vP ts+++ v vrCGhC+++lsvn+ k s l + + s + ++ + +k ++ n + n+ e+a+++v++ Aradu.MF2V4 10 HVFDVPEEICYVQCGLCSSILVVCVPCTSMSMAVlSVRCGHCSTILSVNMIKPSFLPSLVTP---SNQLNIEDGNKISTLNAHNNYNDCEEANNNVTT 104 7899*************************9875538*************9988765444332...223334444444444444444333333333333 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 + +++ ++PPek+qr Psayn+fikeei+r+ka+nP+++h+eafs+aaknWa fP+ Aradu.MF2V4 105 -----PFTTDSA----PNKPPEKKQRTPSAYNCFIKEEIKRLKAENPEMAHKEAFSTAAKNWANFPPSE 164 .....2233333....28************************************************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.1E-52 | 15 | 162 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.83E-10 | 108 | 181 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.3E-7 | 114 | 189 | IPR009071 | High mobility group box domain |
PROSITE profile | PS50118 | 9.247 | 119 | 187 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 1.41E-5 | 121 | 164 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MSSSRTLVRH VFDVPEEICY VQCGLCSSIL VVCVPCTSMS MAVLSVRCGH CSTILSVNMI 60 KPSFLPSLVT PSNQLNIEDG NKISTLNAHN NYNDCEEANN NVTTPFTTDS APNKPPEKKQ 120 RTPSAYNCFI KEEIKRLKAE NPEMAHKEAF STAAKNWANF PPSEYRRGDD EIDEERSTHT 180 PQLANNNKVN IEEGEDRRGR KNLENSMINA PFK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.MF2V4 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015957106.1 | 1e-158 | axial regulator YABBY 4 isoform X1 | ||||
Refseq | XP_025690524.1 | 1e-158 | axial regulator YABBY 4 isoform X1 | ||||
Swissprot | Q9LDT3 | 8e-52 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A444ZVA7 | 1e-149 | A0A444ZVA7_ARAHY; Uncharacterized protein | ||||
STRING | XP_007157432.1 | 4e-67 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6144 | 28 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 1e-53 | YABBY family protein |
Publications ? help Back to Top | |||
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