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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.ME2Y5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 221aa MW: 25350.2 Da PI: 7.1992 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.4 | 5.1e-08 | 25 | 74 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-..STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskK..lsKaeiLekAveYIksLq 55 +Er+RR++++ +++L +llP++++++ +K l + + kA +YIksL+ Aradu.ME2Y5 25 IERNRRKHMKMLYSTLNSLLPNDPNPTRPKeaLLLLDQVDKALNYIKSLE 74 8*********************65333333358889999*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.664 | 17 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.19E-6 | 17 | 78 | No hit | No description |
SuperFamily | SSF47459 | 2.22E-10 | 19 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.01 | 23 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.5E-9 | 23 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-5 | 25 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MDELESRSEA SPSSTNKEKI ERRFIERNRR KHMKMLYSTL NSLLPNDPNP TRPKEALLLL 60 DQVDKALNYI KSLEEKVKMS KEKKNSLLLR MGRKRTRGAC DDGNRPKPPQ LEVHEMGSCL 120 QIVMTCGLDS QFIFYKIIHI LNEENIDVKS ANSSLIGNSM HHVVHAEIPQ SLLQLGATKV 180 RESLKRFVQE PISKNELQSD HELLDFEIDT AELAELLDFL A |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 94 | KKNSLLLRMGRKR |
2 | 91 | 97 | GRKRTRG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.ME2Y5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015953734.1 | 1e-162 | transcription factor bHLH162 | ||||
Refseq | XP_025687653.1 | 1e-162 | transcription factor bHLH162-like | ||||
TrEMBL | A0A445E053 | 1e-160 | A0A445E053_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA12G12880.1 | 2e-71 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 1e-21 | bHLH family protein |