PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.M0KHJ
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 780aa    MW: 88755.8 Da    PI: 7.9484
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.M0KHJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.43.6e-21295386191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  +fYn+Y+   GF +rk+   +  ++g+i++r++vC+keg+r+ +  + ++k+r+ r+ trt+C a l+vk+++  g+w+v+ +++ HnH+l+p
  Aradu.M0KHJ 295 QFYNAYSCWHGFVTRKDDVVRD-NQGRIISRQLVCNKEGRRNMRYLDlDDKSREARSLTRTKCPAWLRVKLDYgCGRWKVSCFVESHNHDLTP 386
                  6****************99998.8888****************99887889999*******************99***************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF516214.19E-2439156IPR015813Pyruvate/Phosphoenolpyruvate kinase-like domain
PfamPF033282.9E-1744159IPR005000HpcH/HpaI aldolase/citrate lyase domain
Gene3DG3DSA:3.20.20.602.2E-1944154IPR015813Pyruvate/Phosphoenolpyruvate kinase-like domain
PfamPF031014.1E-19295386IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.792504540IPR007527Zinc finger, SWIM-type
SMARTSM005752.2E-4515542IPR006564Zinc finger, PMZ-type
Gene3DG3DSA:4.10.60.102.0E-5582589IPR001878Zinc finger, CCHC-type
SuperFamilySSF577562.3E-6642678IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.102.0E-5651671IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.647656671IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003824Molecular Functioncatalytic activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MAESLTCSPV STLLQPSAPA PPQSSAFLRA PPLGLRNPLT YEHRGIVFLI IDSTESVIDI  60
VSFFRFPPIG IHGLAHSVVQ ASGYDIDEGY LGSYQEEMLI MFQVESVEGV KNVGEILAVD  120
GIDFIQMGSL DLSASMRYLW DPGNRNVRQL MREAEANILK RHSGGGFGMG TYLSGSAAVE  180
DVKKFRLSLI DEKHDSEEEE DKNGAERKMR KKEKRRSSLF MVLGCYSGIW KLSNIIQFYA  240
VARRKMMSRN EDDVKNDSDN DLGDDFDYQP NAEDEAEDDN VDSLDSTSKK DEACQFYNAY  300
SCWHGFVTRK DDVVRDNQGR IISRQLVCNK EGRRNMRYLD LDDKSREARS LTRTKCPAWL  360
RVKLDYGCGR WKVSCFVESH NHDLTPPQFA HLVPANCRLT ITDKVQVENL HNFGVKTYNI  420
MGALKEYRNN ELIANFKSQC SEPVMITSLE VYERSASCYF TRNIFKEICN EIQRAGALNI  480
KVLSTTLDKV EFSVTALGDS AKDRQVEVDR SKNLFSCSCK LFESRGIPCS HVFYSMKFEN  540
ILEFPNSLIY KRWTKNAKNE FISLEMLVND DVEKVLKFRV GALASNCNKL CDIACKDLVD  600
FDEIQSKLVK LVIRLQSRKQ GKSTPNVNVE GINDPFVVKS KGAPSKRSSW RKKRACSNCH  660
KYGHYYKHCP DLMQHSMQVK SEHHSGPKTK PFKKGGSRKF TTTGMRNRKG NDNTFDEVKE  720
SQQDKVHSFT NYECFNDVMD EKCDTPHVQN DVRDLLPSSM PCGNKQGSYM ALFVSMHRTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4b5w_A2e-1410169532114-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE
4b5w_B2e-1410169532114-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE
4b5w_C2e-1410169532114-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE
4b5w_D2e-1410169532114-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE
4b5w_E2e-1410169532114-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE
4b5w_F2e-1410169532114-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206214RKMRKKEKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.M0KHJ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371770.0HQ637177.1 Arachis hypogaea clone AHF-303L13 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A445C5570.0A0A445C557_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF845424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-16FAR1-related sequence 5