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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.M0KHJ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 780aa MW: 88755.8 Da PI: 7.9484 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.4 | 3.6e-21 | 295 | 386 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +fYn+Y+ GF +rk+ + ++g+i++r++vC+keg+r+ + + ++k+r+ r+ trt+C a l+vk+++ g+w+v+ +++ HnH+l+p Aradu.M0KHJ 295 QFYNAYSCWHGFVTRKDDVVRD-NQGRIISRQLVCNKEGRRNMRYLDlDDKSREARSLTRTKCPAWLRVKLDYgCGRWKVSCFVESHNHDLTP 386 6****************99998.8888****************99887889999*******************99***************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF51621 | 4.19E-24 | 39 | 156 | IPR015813 | Pyruvate/Phosphoenolpyruvate kinase-like domain |
Pfam | PF03328 | 2.9E-17 | 44 | 159 | IPR005000 | HpcH/HpaI aldolase/citrate lyase domain |
Gene3D | G3DSA:3.20.20.60 | 2.2E-19 | 44 | 154 | IPR015813 | Pyruvate/Phosphoenolpyruvate kinase-like domain |
Pfam | PF03101 | 4.1E-19 | 295 | 386 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 9.792 | 504 | 540 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.2E-4 | 515 | 542 | IPR006564 | Zinc finger, PMZ-type |
Gene3D | G3DSA:4.10.60.10 | 2.0E-5 | 582 | 589 | IPR001878 | Zinc finger, CCHC-type |
SuperFamily | SSF57756 | 2.3E-6 | 642 | 678 | IPR001878 | Zinc finger, CCHC-type |
Gene3D | G3DSA:4.10.60.10 | 2.0E-5 | 651 | 671 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50158 | 8.647 | 656 | 671 | IPR001878 | Zinc finger, CCHC-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003824 | Molecular Function | catalytic activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 780 aa Download sequence Send to blast |
MAESLTCSPV STLLQPSAPA PPQSSAFLRA PPLGLRNPLT YEHRGIVFLI IDSTESVIDI 60 VSFFRFPPIG IHGLAHSVVQ ASGYDIDEGY LGSYQEEMLI MFQVESVEGV KNVGEILAVD 120 GIDFIQMGSL DLSASMRYLW DPGNRNVRQL MREAEANILK RHSGGGFGMG TYLSGSAAVE 180 DVKKFRLSLI DEKHDSEEEE DKNGAERKMR KKEKRRSSLF MVLGCYSGIW KLSNIIQFYA 240 VARRKMMSRN EDDVKNDSDN DLGDDFDYQP NAEDEAEDDN VDSLDSTSKK DEACQFYNAY 300 SCWHGFVTRK DDVVRDNQGR IISRQLVCNK EGRRNMRYLD LDDKSREARS LTRTKCPAWL 360 RVKLDYGCGR WKVSCFVESH NHDLTPPQFA HLVPANCRLT ITDKVQVENL HNFGVKTYNI 420 MGALKEYRNN ELIANFKSQC SEPVMITSLE VYERSASCYF TRNIFKEICN EIQRAGALNI 480 KVLSTTLDKV EFSVTALGDS AKDRQVEVDR SKNLFSCSCK LFESRGIPCS HVFYSMKFEN 540 ILEFPNSLIY KRWTKNAKNE FISLEMLVND DVEKVLKFRV GALASNCNKL CDIACKDLVD 600 FDEIQSKLVK LVIRLQSRKQ GKSTPNVNVE GINDPFVVKS KGAPSKRSSW RKKRACSNCH 660 KYGHYYKHCP DLMQHSMQVK SEHHSGPKTK PFKKGGSRKF TTTGMRNRKG NDNTFDEVKE 720 SQQDKVHSFT NYECFNDVMD EKCDTPHVQN DVRDLLPSSM PCGNKQGSYM ALFVSMHRTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4b5w_A | 2e-14 | 10 | 169 | 53 | 211 | 4-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE |
4b5w_B | 2e-14 | 10 | 169 | 53 | 211 | 4-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE |
4b5w_C | 2e-14 | 10 | 169 | 53 | 211 | 4-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE |
4b5w_D | 2e-14 | 10 | 169 | 53 | 211 | 4-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE |
4b5w_E | 2e-14 | 10 | 169 | 53 | 211 | 4-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE |
4b5w_F | 2e-14 | 10 | 169 | 53 | 211 | 4-HYDROXY-2-OXO-HEPTANE-1,7-DIOATE ALDOLASE |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 206 | 214 | RKMRKKEKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.M0KHJ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ637177 | 0.0 | HQ637177.1 Arachis hypogaea clone AHF-303L13 NBS-LRR gene cluster, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A445C557 | 0.0 | A0A445C557_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF845 | 4 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-16 | FAR1-related sequence 5 |