PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.LYC6U | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 233aa MW: 26151.6 Da PI: 10.2733 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.5 | 1.2e-13 | 74 | 120 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR++i ++f L +P++ kK +K++iL +A+ YIk+L+ Aradu.LYC6U 74 DHIVAERKRRQEITQRFIALSATIPHL-----KKIDKVSILSEAIAYIKQLK 120 5899***********************.....9*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.335 | 70 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.02E-9 | 75 | 124 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.7E-17 | 75 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.1E-11 | 75 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.09E-15 | 75 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.0E-13 | 76 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MSQNSEVRSH QKRLMEEVEI HVSNGGVVQE VGERLSLPKL MMMMMMSKSN SSKSIVNSGN 60 TAKKARRSSS ECLDHIVAER KRRQEITQRF IALSATIPHL KKIDKVSILS EAIAYIKQLK 120 EQGKKLEEES RKKNRTVVES VSLVNKRHDA ACELVEARAL EKQVLIRIHC HGHKAVPQVF 180 SHLTNLDLSI VSTSVLPFGT CAIDITIVAQ MGEKYRASMK DLVQSLRLAI PLC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 83 | ERKRRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.LYC6U |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015933641.1 | 1e-139 | transcription factor bHLH18-like | ||||
TrEMBL | A0A445CIP4 | 1e-137 | A0A445CIP4_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA07G03051.1 | 2e-51 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF23795 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22760.1 | 6e-26 | bHLH family protein |