PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.LW8Y2
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 585aa    MW: 63547.6 Da    PI: 5.2193
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.LW8Y2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.4e-09399447355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Aradu.LW8Y2 399 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 447
                  58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.53E-11394451No hitNo description
SuperFamilySSF474599.29E-17394464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485396446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16397463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-6399447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10402452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MEDGRVPKVA QDQKWELHFG HCCRDLRREA ASGCLYIIGI VKRALEMSDK EKFELDRKED  60
PMNYSTGMAS DRRFGSSNLP NSSVGLAGRG DLNGSSSCSS ASLVDSFGPN FWDTTTNSQN  120
LGFCGINVHN SGSSLNPIEL RKDGFGFGRG GHDHGTLEMG WNQGNGFIPN ESAMFSQNLS  180
RFPSDSGFIE RATRFSCFGG GDFGDMVNAY GIPQSMGPYA GTGGEAIHRA RDGGQPQESN  240
PNEAEAEAVK DATPSVEYLA TKASPLKNDK RSENHVMPQN EGQQGPSRPP NETDRAKSSD  300
DGGVQDDSPM LDGVSDEPCL KGLDSKKRKR IGQDADNDKA VELPTEGAGD ISESQQKGEQ  360
EPTPTNKASG KNAKQGPQVS DPPKEEYIHV RARRGQATNS HSLAERVRRE KISERMKFLQ  420
DLVPGCSKVT GKAVMLDEII NYVQSLQRQV EFLSMKLATV NPRLDFDIEG LIPKDILHQR  480
PGPSSALGFP LEMSMAFPPL HPSQPGLIQP TLPSIANSSD ILRRTVHPQL ASPASGSFKE  540
PNQVPDVWED ELHNVVQMSF ATTTAPMSTQ DVDGTVAATQ MKVEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1319328LKGLDSKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.LW8Y2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150437e-33AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015967529.10.0transcription factor bHLH49
TrEMBLA0A445CZN60.0A0A445CZN6_ARAHY; Uncharacterized protein
STRINGGLYMA01G09400.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.38e-99bHLH family protein