PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aradu.LW5ZP

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 470aa MW: 52762.6 Da PI: 8.9728

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.LW5ZP	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.2	5.5e-18	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk vGFs+r++ ++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Aradu.LW5ZP 51 KFYRNYAKAVGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137 6*************998776..8889*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-15	51	137	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.198	257	293	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.9E-4	266	290	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.0E-4	268	295	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MDPSSSDFVL NPGDVDYEFE SNEVHEHLSV VDDELVPKVG MTFTTLEDAG KFYRNYAKAV 60 GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG 120 AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN DEAARSFSSS NNTIIASEAG 180 SKQRESDAAD FHTVIPCATK SSIEAQFQDA YTHAKFREVQ AQFRGKANCI TRLKNSALGY 240 SVYEVGEQVS SSIFDKFAVT YDSVAAEVKC QCLLFESRGI LCRHALSVLS FEQVSQVSPR 300 YILERWSKKV KRRHTHIKSS HDEPLREPRS KRFDQLVFRS QNICEFASES EELTAILHRA 360 YDNVMAEMEA LKAKRKGTSS LSHEDANLES VNELQSPPRI RTRGRPKNRL GSKLEKQIAN 420 ATKKKKTKVL SEINLFDAAS AAHSSCSQYQ GQVINYQLRV PAAGDNSLGV

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MDPSSSDFVL NPGDVDYEFE SNEVHEHLSV VDDELVPKVG MTFTTLEDAG KFYRNYAKAV  60
GFSTRVRCTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN DEAARSFSSS NNTIIASEAG  180
SKQRESDAAD FHTVIPCATK SSIEAQFQDA YTHAKFREVQ AQFRGKANCI TRLKNSALGY  240
SVYEVGEQVS SSIFDKFAVT YDSVAAEVKC QCLLFESRGI LCRHALSVLS FEQVSQVSPR  300
YILERWSKKV KRRHTHIKSS HDEPLREPRS KRFDQLVFRS QNICEFASES EELTAILHRA  360
YDNVMAEMEA LKAKRKGTSS LSHEDANLES VNELQSPPRI RTRGRPKNRL GSKLEKQIAN  420
ATKKKKTKVL SEINLFDAAS AAHSSCSQYQ GQVINYQLRV PAAGDNSLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.LW5ZP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445CV52	0.0	A0A445CV52_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	6e-17	far-red elongated hypocotyls 3