PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.LS2KI
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 591aa    MW: 66447.1 Da    PI: 6.7767
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.LS2KIgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.6e-14401447455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h   Er+RR+++N++f +Lr+++P+ +      K +K++iL  A+eY+++L+
  Aradu.LS2KI 401 NHALSERKRRAKLNERFLTLRSMVPTiS------KDDKVSILDDAMEYLRKLE 447
                  7999**********************66......****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.1E-497185IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.177397446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-17399459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-13400451No hitNo description
Gene3DG3DSA:4.10.280.101.6E-18401458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-11401447IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-14403452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MVPEKVKKQL ALAVRSIQWS YAIFWSSSPT QPGVLSWGEG YYNGDIKTRK TSQVAEHNSD  60
QIISLQRSEQ LRELYSSLAD SKSCSQTKRP SAALSPEDLT DTEWFYLVCM SFVFNIGQGL  120
PGRSLAYGQP IWLCNAHSAD NGVFCRSLLA KTVVCFPFLD GVIELGTTDP VSEDYSLIQV  180
IRNSFLDILE TNLPNNPGAN LNTRNKEECG VACEGFDHNA YGLKLTPEVI GYELINITSP  240
TTSSNALQAN QQTDGRTMFP TEFSNYFHNS RNSSDCLSEN HCAQDLQQCN DNPRTTLVNL  300
GSDDKHYQRL LSALPIRPDD DRLIMRVHLR NFRGESSFAI WKQLGSMDCQ RSRRGGTPQN  360
LLKKVLFEVP LMHMDGLLES QEKIGSKDRM RLSEVDDVGM NHALSERKRR AKLNERFLTL  420
RSMVPTISKD DKVSILDDAM EYLRKLEEKV RKLEAEKDVT DLDGIVSTRT SQDMVEKASD  480
NNSNKNSKSV SNKRRACEAA GDEEMNNSEI DVGIYVSESE VVIEMKCPWR EGLLLETVEA  540
LSSLHLDCHS LQSSKSHGTL YLTIKSKFRG ANNVAPVKRI RRTLQKAAMK S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-171918524192Transcription factor MYC3
4rqw_B2e-171918524192Transcription factor MYC3
4rs9_A2e-171918524192Transcription factor MYC3
4yz6_A2e-171918524192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.LS2KI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015964311.10.0transcription factor EGL1-like isoform X1
TrEMBLA0A445D6740.0A0A445D674_ARAHY; Uncharacterized protein
STRINGGLYMA08G01810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.31e-140bHLH family protein