PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.LQT70
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 378aa    MW: 40924.2 Da    PI: 5.4921
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.LQT70genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.81.2e-15941341856
                  HHH..HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  18 lFe..knrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +Fe  ++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Aradu.LQT70  94 YFEgeESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 134
                  6663359******************************9877 PP
2START54.34.1e-18259365488
                  HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
        START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv...............dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                  ++a++el+++a+ +ep+W +s+    e++n+de+++ f++ ++               + +ea+r++++v+ +l++l++++ld + qW+e+++    k
  Aradu.LQT70 259 NKAMEELITMATMGEPLWLRSVetgrEILNYDEYIKHFSSLQNsssnntnttpssskrSIIEASRDTALVFVDLPRLLQTFLDAN-QWKEMFPclvsK 355
                  579***********************************999889*****************************************.************ PP

                  EEEEEEECTT CS
        START  79 aetlevissg 88 
                  a+t++vi++g
  Aradu.LQT70 356 AATVDVICNG 365
                  *********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003897.9E-785140IPR001356Homeobox domain
PROSITE profilePS5007113.79992136IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.8E-1493134IPR009057Homeodomain-like
PfamPF000465.9E-1394134IPR001356Homeobox domain
SuperFamilySSF466892.21E-1294142IPR009057Homeodomain-like
CDDcd000861.90E-1198134No hitNo description
PRINTSPR000316.2E-5107116IPR000047Helix-turn-helix motif
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PRINTSPR000316.2E-5116132IPR000047Helix-turn-helix motif
PROSITE profilePS5084813.798247378IPR002913START domain
SuperFamilySSF559615.13E-5249362No hitNo description
PfamPF018522.0E-10259365IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAADMSNTNT NTNNNNNNHP SHAKDFFASP ALSLSLAGIF RHAGVAAAEG EAATSNMEVE  60
DGDEGSGGGG GAGHTVDISS ENSGPTRSRS EDDYFEGEES PHPDEKQRQQ LSKQLGLAPR  120
QVKFWFQNRR TQIKAIQERH ENSLLKTEIE KLKEKNKGLR ETINKACCPN CGVATTSTRD  180
GAIPTEEQQL RIENAKLKAE IEKLRGALGK YGGSGGGGST SPSCSSGAAG GHEQENRSSL  240
DFYTGIFGVD KSRIMDTVNK AMEELITMAT MGEPLWLRSV ETGREILNYD EYIKHFSSLQ  300
NSSSNNTNTT PSSSKRSIIE ASRDTALVFV DLPRLLQTFL DANQWKEMFP CLVSKAATVD  360
VICNGEGSNR NGAAQLVI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.LQT70
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311714e-95KT031171.1 Glycine max clone HN_CCL_120 homeodomain/HOMEOBOX transcription factor (Glyma13g43350.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020982478.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466071e-110HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A444Y9A40.0A0A444Y9A4_ARAHY; Uncharacterized protein
STRINGGLYMA15G01960.11e-179(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.13e-92HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]