PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aradu.LJV84

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

SRS

Protein Properties

Length: 323aa MW: 35026.4 Da PI: 6.8273

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.LJV84	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	211.1	2.8e-65	114	259	5	153
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 +++CqdCGnqakkdC h RCRtCC+srgf+C+thvkstWvpaakrrerq++la++++++ +a e + + + +++s +s+ +++ +++ le Aradu.LJV84 114 GTNCQDCGNQAKKDCLHLRCRTCCRSRGFQCSTHVKSTWVPAAKRRERQHTLASLQQQQPGRAGEGEGGGDVH---SRRSREASACVPMPITTTGLEL 208 569**************************************************999988775554444433...3344444444555555667999 PP DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++P+e++s+avfrcv+vs +d +e +aYqtav+igGhvfkGiLydqG++ Aradu.LJV84 209 GQFPPELNSPAVFRCVKVSPMDAPDERYAYQTAVNIGGHVFKGILYDQGPD 259 9**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.9E-63	114	259	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.9E-26	116	158	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.1E-23	210	258	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MAGLFSLGPH HSKQEEQDQE ENNNNNSNIQ LLLRNEEIYT NSSTTNTNTN RGFEIWPHHH 60 QPSYYSFGLG PSSERNTTTT NLNDDVSVSF SDESNRFGFT VMRSSSSGSG LGSGTNCQDC 120 GNQAKKDCLH LRCRTCCRSR GFQCSTHVKS TWVPAAKRRE RQHTLASLQQ QQPGRAGEGE 180 GGGDVHSRRS REASACVPMP ITTTGLELGQ FPPELNSPAV FRCVKVSPMD APDERYAYQT 240 AVNIGGHVFK GILYDQGPDG PFATNAAAAG EGSSHGGGEP HHQQLSLITT TSGAGITFDP 300 SQLYPAPMNA FMAGTQFFPP PRT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.LJV84

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015969639.1	0.0	protein SHI RELATED SEQUENCE 3-like
Refseq	XP_025604863.1	0.0	protein SHI RELATED SEQUENCE 3-like
TrEMBL	A0A445CK14	0.0	A0A445CK14_ARAHY; Uncharacterized protein
STRING	GLYMA17G37410.1	1e-115	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-70	SHI-related sequence 5