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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.LC3ZH | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WRKY | ||||||||
Protein Properties | Length: 170aa MW: 18995.6 Da PI: 9.1239 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 49.5 | 8.7e-16 | 107 | 145 | 21 | 59 |
-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +sYYrCt +C+v+k+ver+ +dp+++++tYeg+Hnhe Aradu.LC3ZH 107 RKSYYRCTNVRCNVRKHVERAINDPRAFVTTYEGKHNHE 145 58************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 4.18E-17 | 94 | 147 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.99 | 95 | 147 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.2E-16 | 100 | 146 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-10 | 107 | 145 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.0E-15 | 108 | 147 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MLAAGKLIAN DVVAKEYLAS EIISHYVIHG VSVAEIVRNM ITVMGALIIA STLQIVLGFS 60 GLRRNVARRN ESRSNEAAVS EEALIEPRIV LQSSTDSEII GDGFHWRKSY YRCTNVRCNV 120 RKHVERAIND PRAFVTTYEG KHNHEIPTKN INPNIPSRRD SQASLSKDEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-19 | 91 | 147 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-19 | 91 | 147 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.LC3ZH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025663689.1 | 3e-61 | WRKY transcription factor 44 | ||||
Refseq | XP_025663690.1 | 3e-61 | WRKY transcription factor 44 | ||||
Refseq | XP_025663691.1 | 3e-61 | WRKY transcription factor 44 | ||||
TrEMBL | A0A445B6H4 | 1e-78 | A0A445B6H4_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445B6J5 | 2e-82 | A0A445B6J5_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA03G33376.1 | 1e-46 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07100.2 | 2e-25 | WRKY DNA-binding protein 26 |