PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.L92HL
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 430aa    MW: 48905 Da    PI: 9.3654
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.L92HLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.3e-07403424426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                   lCr ++++G C +Gd+CkF H+
  Aradu.L92HL 403 QLCR-YYAGGGCYFGDNCKFVHD 424
                  6999.8888*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689067.14E-675121No hitNo description
Gene3DG3DSA:1.10.720.301.2E-576121IPR003034SAP domain
PfamPF020379.5E-786120IPR003034SAP domain
SuperFamilySSF902293.01E-7399424IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.413400426IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-4400425IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4402424IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5402424IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MANKHSPLEP HELSSDQGSY CDDFEGDPFY EETESKFSYL SLSPSTNKAQ ARVVDGTNPE  60
EIEITTPASN EVNFERVERL IKGGMLERLK VDECKLYLRK NCLRLSGNKD VLVQRIKEHL  120
QIINGGGERK YPRSSFVLDC KGDACTGDVV LFEQNVYEMF NIASRSASGP SCGKRTVAGR  180
IVKESYGTAK QQHTFTIEVL WSKGEKPFPP LHPLLIKGRN LYRLKTLRQK WEDEGERQKI  240
LTEKHSRGSI ARADREARVQ EKVNRQAIVE NRVSRKHSVI HHPHAINQEK PAFPSKSSAV  300
SAINQEKPPF PSAVTEQWSK SASSRRSNES TSFGVNHVNN QQDWKHSSDP IIKAQLGDLH  360
SKEKGQYQYH PSERNRFAHR NPLTSANHLL PLLNNREIHK QKQLCRYYAG GGCYFGDNCK  420
FVHDLILSNQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.L92HL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015939097.10.0zinc finger CCCH domain-containing protein 62 isoform X1
RefseqXP_025618319.10.0zinc finger CCCH domain-containing protein 62 isoform X1
SwissprotQ338N21e-74C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBLA0A445BMZ80.0A0A445BMZ8_ARAHY; Uncharacterized protein
STRINGXP_004510536.11e-149(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116522224
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]