PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.L8VRB
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 304aa    MW: 34244.6 Da    PI: 9.7523
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.L8VRBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.87.9e-1386137155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++++k+L+
  Aradu.L8VRB  86 QRMTHIAVERNRRKQMNHYLSLLRSLMPDS---YVQRGDQASIIGGAINFVKELE 137
                  79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.30E-1184141No hitNo description
Gene3DG3DSA:4.10.280.101.0E-1284141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.83185136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-1585149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-1086137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-991142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MALKAVVYPQ SQDPSFGYGV NYNNCYRNWS NSYNNEDQRV ETTYPAEIWN NNNTTCSSPP  60
SVLPSSCRPK RRRAKSRKNK EQIENQRMTH IAVERNRRKQ MNHYLSLLRS LMPDSYVQRG  120
DQASIIGGAI NFVKELEQKL QFLGATYQEG EDGNKKKKKN MAFCEFFTFP QYRRTATATA  180
TTSSSSSNSE KSSSSRTVAG EEELGEVAAD IEVTMVESHA NVKIRSKKKP KQLLKMVSAL  240
HNMRLTILHL NVEDDCKLGS VDDIAAAVYQ LMNSIQQEAP IILASTNFKI QASSPVSFIT  300
KFGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18697RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.L8VRB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015939909.10.0transcription factor bHLH96-like
RefseqXP_025619099.10.0transcription factor bHLH96
SwissprotQ9C7T45e-64BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A445BKI80.0A0A445BKI8_ARAHY; Uncharacterized protein
STRINGGLYMA20G37550.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.14e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]