PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aradu.L7G4U

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 616aa MW: 70916 Da PI: 9.5748

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.L7G4U	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61	3.5e-19	81	171	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY++YAk GF r +++ + ng+ +r++vC++eg+r+++ + ++++r +r+ tr+ C+a+++ + + kw+vt +e+ HnH+l Aradu.L7G4U 81 QFYKNYAKVHGFVARCDEKGYD-FNGNLNMRQMVCNREGTRRKKYLEmENRKRDHRPITRVMCQARIRFHYDMkLRKWKVTAFEETHNHDLI 171 6************9998887.9999***********9988867788889***********998799************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-16	81	172	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.829	280	316	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.007	291	318	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence Send to blast
MGSVHKNSTE SSVEFDDLSF EYSGSSEEND INISQKKGTI DEAMKMVDRG DGFGEVEKKL 60 TELTRDDIWG IEHDSVEECV QFYKNYAKVH GFVARCDEKG YDFNGNLNMR QMVCNREGTR 120 RKKYLEMENR KRDHRPITRV MCQARIRFHY DMKLRKWKVT AFEETHNHDL IPPKYIQFVP 180 AYRVMTEADK AQANSLHDYV RQYRTNELLS DFKSLFSSPV LTTCFEDIEK EAANIFTHNM 240 FKEVRNEILE ASKLNVVGHS IDGNKIEVRM NKYQEPAIEY KVRYDRSTNN FACDCRLFES 300 RGIPCSHIFC TMRHDHISTI PNTLIHKRWT KDAKKEYISS LTAEDIESEK IAGVRYGALA 360 TLCFSLCDKA SKHRDDFMEI REDIFGLIMK LHKRHNPNDK LPSTANLVGD PSVVKTKGAP 420 RQTTKTAKAQ VQSNQYNDNR TEKATAQTKI NAPEATFADT KKDRISSVEK SKKRKRLDNN 480 RIEKGRKPNE ADHEEVPPEI GTYGAISSTK GIESGKMKER EGKSEKRKTE EESFRKRRRK 540 EGEAAAVPSC PARHRSSSHR VTIESRNARE EREPMAEEGS PLLRRRRCGS GPRRGTTPLR 600 QGARRHRQGS VIAATP

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence Send to blast

MGSVHKNSTE SSVEFDDLSF EYSGSSEEND INISQKKGTI DEAMKMVDRG DGFGEVEKKL  60
TELTRDDIWG IEHDSVEECV QFYKNYAKVH GFVARCDEKG YDFNGNLNMR QMVCNREGTR  120
RKKYLEMENR KRDHRPITRV MCQARIRFHY DMKLRKWKVT AFEETHNHDL IPPKYIQFVP  180
AYRVMTEADK AQANSLHDYV RQYRTNELLS DFKSLFSSPV LTTCFEDIEK EAANIFTHNM  240
FKEVRNEILE ASKLNVVGHS IDGNKIEVRM NKYQEPAIEY KVRYDRSTNN FACDCRLFES  300
RGIPCSHIFC TMRHDHISTI PNTLIHKRWT KDAKKEYISS LTAEDIESEK IAGVRYGALA  360
TLCFSLCDKA SKHRDDFMEI REDIFGLIMK LHKRHNPNDK LPSTANLVGD PSVVKTKGAP  420
RQTTKTAKAQ VQSNQYNDNR TEKATAQTKI NAPEATFADT KKDRISSVEK SKKRKRLDNN  480
RIEKGRKPNE ADHEEVPPEI GTYGAISSTK GIESGKMKER EGKSEKRKTE EESFRKRRRK  540
EGEAAAVPSC PARHRSSSHR VTIESRNARE EREPMAEEGS PLLRRRRCGS GPRRGTTPLR  600
QGARRHRQGS VIAATP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	525	539	KRKTEEESFRKRRRK
2	534	538	RKRRR
3	534	540	RKRRRKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.L7G4U

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015944684.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445EE92	1e-146	A0A445EE92_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF845	4	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-14	FAR1-related sequence 5