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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.L4JLT | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ARF | ||||||||
Protein Properties | Length: 706aa MW: 78782.8 Da PI: 6.5969 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.4 | 7.3e-20 | 134 | 247 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE........EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliy......rkksgryvltkGWkeFvkangLkegDfv 80 f k+ltpsd++++g ++ + +a+e+ +++++ s++l+ +d++g +W++k+ ++++r+++t+GW+ Fv +++L +gD + Aradu.L4JLT 134 FSKILTPSDTSTHGGCSIRRMHATEClpplpsppsdadENSPPPSQELVAKDLHGFEWKFKHVLrgkgdkGGSPKRHLFTTGWSTFVTSKRLVAGDAF 231 88*********************************99966677888****************88665544444555********************** PP EEEE-SSSEE..EEEEE- CS B3 81 vFkldgrsefelvvkvfr 98 vF + +++e++v+++r Aradu.L4JLT 232 VFL--RGEDGEMRVGIRR 247 ***..4499*******98 PP | |||||||
2 | Auxin_resp | 97.1 | 2.6e-32 | 273 | 352 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t+++F v+Y+Pr+ s+F++ ++k+++a+k+k+++GmR+km+fe e+s+err+sGt+vgv d++p W+nS+WrsLk Aradu.L4JLT 273 ASHAVMTRTMFVVYYKPRS--SQFIIGLNKYLEAVKNKFTAGMRYKMRFEVEESPERRFSGTIVGVGDVSP-GWSNSQWRSLK 352 689***************6..9*************************************************.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.19E-29 | 125 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-33 | 125 | 262 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.49E-15 | 132 | 247 | No hit | No description |
PROSITE profile | PS50863 | 10.941 | 134 | 249 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-17 | 134 | 247 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.2E-16 | 134 | 249 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.1E-29 | 273 | 352 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.0E-11 | 583 | 679 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.7E-12 | 593 | 674 | No hit | No description |
PROSITE profile | PS51745 | 23.846 | 598 | 681 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 706 aa Download sequence Send to blast |
MANLECNLRG PPTPTAQTGE GDEDLYTELW KLCAGPLVDV PRTGERVYYF PQGHMEQLQA 60 STNQEVNQEL SQQIPHFNLP TKILCRVVHI QLLAEQETDE VYARITLLPE PDQKEPTIPD 120 PSPVESQRET FHSFSKILTP SDTSTHGGCS IRRMHATECL PPLPSPPSDA DENSPPPSQE 180 LVAKDLHGFE WKFKHVLRGK GDKGGSPKRH LFTTGWSTFV TSKRLVAGDA FVFLRGEDGE 240 MRVGIRRLAR QQIPMPSSVI SSQSMHLGVL ATASHAVMTR TMFVVYYKPR SSQFIIGLNK 300 YLEAVKNKFT AGMRYKMRFE VEESPERRFS GTIVGVGDVS PGWSNSQWRS LKVHWDEPAT 360 FPRPERVSAW EIEPFVVSTA LAKRPRHADH TSSSEIASNT PASAFWFHGS SMSHDPAELG 420 GAEVQCKENQ VVWSLRQKET NGNPMNSHSS SSRVRMEGIW SNSPHVSVPP NPPNNNAAAK 480 QGLSPISSKP NDDGLTHDKV EVDGRKKTEN PTKIFLFGVN LTNNFRSNVS LPEKEQACSA 540 IVPIGPKEST PITITASATQ NAQNSNYSVS DKEQQNQISS DVLPAEKPSK LASLPSMRTR 600 TKVQMQGVAV GRAVDLTMLN GYDELTIELE KLFHIEGELR SQNKWAVTFT DDENDMMLVG 660 DDPWPEFCNI VKRIYIYSRE DVKKMKYKLS VPSSDCEETL LSKEET |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-151 | 19 | 375 | 13 | 355 | Auxin response factor 1 |
4ldw_A | 1e-151 | 19 | 375 | 13 | 355 | Auxin response factor 1 |
4ldw_B | 1e-151 | 19 | 375 | 13 | 355 | Auxin response factor 1 |
4ldx_A | 1e-151 | 19 | 375 | 13 | 355 | Auxin response factor 1 |
4ldx_B | 1e-151 | 19 | 375 | 13 | 355 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.L4JLT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025603370.1 | 0.0 | auxin response factor 9 isoform X2 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A445CPI3 | 0.0 | A0A445CPI3_ARAHY; Auxin response factor | ||||
STRING | XP_007147325.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1511 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |