PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.L2FUR
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 579aa    MW: 66458.8 Da    PI: 9.4995
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.L2FURgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.47.9e-2647137190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  +fYn+Y++  GFs+r+ ++ ++ + g i+++tfvC+++g+re++  + ++++r+++  tr+gC a++++k+++ +gkw+v++++ eHnHela
  Aradu.L2FUR  47 SFYNNYSRLKGFSTRQGRKVTN-TAGDIVRYTFVCNRQGYREKKWLQmANRKREHKIMTRCGCLAEMRIKRKDgSGKWYVSRFVDEHNHELA 137
                  5****************99998.7777***************998776788999999*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-2347137IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.755333369IPR007527Zinc finger, SWIM-type
PfamPF044345.8E-6345366IPR007527Zinc finger, SWIM-type
SuperFamilySSF577562.72E-6474514IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.105.1E-4482510IPR001878Zinc finger, CCHC-type
PROSITE profilePS501589.307492509IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MGIEAEEYFR DYASKDDGRN EGFDSDEGVG PDDVLRMEFN TPDEAKSFYN NYSRLKGFST  60
RQGRKVTNTA GDIVRYTFVC NRQGYREKKW LQMANRKREH KIMTRCGCLA EMRIKRKDGS  120
GKWYVSRFVD EHNHELASGK FVDYLRSHRR LSEVEIAQMT SLREVGISIP KIYESFAAQL  180
GGFNLVTFTK QDMYNEVRRQ RELQNGDAML DECGVREVEW VKDLYRKKTA WATAYIRGQF  240
FAGIRTTSRC ESLHAKLGRF VESRYGVLEF VTNFQRCIDF LRDNEDELEF RSWYGTPVLQ  300
TEFVELEKDG WTKYTREMFW RFREALKRPE KKWEVLRQNV GNKFSCTCLR MESFGLPCLH  360
ILAVLVRLDY TIIPNTLVLR RWSKIAKLHY GLNCTRNETQ EQTTTYRSRL GAFAQLCTRL  420
GRVACMSDED FKYYSHKVLT DTICLEIKNG LRPPEDVGLT AEEQRVKDPI SVRTKGTGRL  480
SQASASTGKK RRKCSNCGRL GHRRTRCPNR AGQEGGQPCV GVNKRVRGGA GGCSFQQPGG  540
CVTWRPLICS GVALAHFSGT SILGGMLSLL AATVTGDYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1488492KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.L2FUR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020994004.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLA0A444ZAR30.0A0A444ZAR3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11042217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-22FAR1-related sequence 5