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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.L25DZ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 309aa MW: 32406.6 Da PI: 9.8721 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.9e-17 | 30 | 72 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tIar + gRt++ +k++w++ Aradu.L25DZ 30 AFTPEEDDTIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 72 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 8.345 | 1 | 22 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-11 | 2 | 35 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.88E-24 | 2 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.485 | 23 | 77 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-14 | 27 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 30 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.18E-11 | 30 | 73 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-20 | 36 | 74 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MVSKSIPGRS GKSCRLRWCN QLSPQVEHRA FTPEEDDTII RAHARFGNKW ATIARLLSGR 60 TDNAIKNHWN STLKRKCASM GPIDDPHFAQ PLKRSVSAGA AVPVSTGLYM NPPTPGSPSG 120 SDVSESSVPA ASTSHVFRPV PRAGGVVPPV ETTSSSYDPP TSLSLSLPGV DSNSEVSNRG 180 NEPSPHSAPP LTAIPLLPIM SAAVSATVAA VPAVTATAPG AAPLAAQPLQ QIRDPSAVAA 240 VPKQNNGAAP FNFSAELLAV MQDMIRKEVR SYMAGLEQQS NNNGMCFQAA DGGFRNASVK 300 RIGISRIDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-27 | 1 | 76 | 29 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.L25DZ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF208674 | 0.0 | KF208674.1 Arachis hypogaea putative MYB-related protein 20 (MYB20) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015963920.1 | 0.0 | transcription factor MYB44 | ||||
Refseq | XP_025698656.1 | 0.0 | transcription factor MYB44 | ||||
TrEMBL | V5T7X2 | 0.0 | V5T7X2_ARAHY; Putative MYB-related protein 20 | ||||
STRING | GLYMA01G39740.2 | 1e-134 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF843 | 34 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 5e-64 | myb domain protein 73 |