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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.K49J7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 223aa MW: 24348.4 Da PI: 9.8252 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.2 | 5.2e-15 | 111 | 156 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++W++eE+ +++++ ++lG+g+W+ I+r++ +Rt+ q+ s+ qky Aradu.K49J7 111 LAWSEEEHRIFLEGMEKLGKGNWRGISRCFVRTRTPTQVASHAQKY 156 68*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.697 | 12 | 27 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 16.765 | 105 | 161 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.4E-16 | 108 | 160 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.87E-16 | 108 | 162 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-10 | 109 | 159 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-12 | 112 | 156 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-11 | 112 | 155 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.39E-10 | 112 | 157 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MCGRIIIIIM ARKCTYCGNS GHNSRTCNHS FSSTTGGCSG LKLFGVQLDD NQYYSSSSCM 60 DYLLSLSAAA SLSSSLVGAN KNSHEISYSY LTSGASSSGL MSTIKDNNKG LAWSEEEHRI 120 FLEGMEKLGK GNWRGISRCF VRTRTPTQVA SHAQKYFLRQ TRRRNTFRSR KHRLTLANEG 180 TRNSDAVVLS HWLASATSTN CTSIQGAAAP DLELKLATPS PSL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.K49J7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015935116.1 | 1e-157 | transcription factor MYBS3-like | ||||
Refseq | XP_025616306.1 | 1e-157 | transcription factor MYBS3-like | ||||
TrEMBL | A0A445BUK1 | 1e-156 | A0A445BUK1_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA06G05450.2 | 5e-56 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15142 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 2e-31 | MYB_related family protein |