PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.K2UJH | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 681aa MW: 75407.7 Da PI: 4.3089 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94.2 | 2.1e-29 | 25 | 134 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lp GfrF+Ptdeelv++yL++k++g+ e+ vi+e+d++k+ePwdLp ++ + fF + y t r + g ++ + ++++++ Aradu.K2UJH 25 LPLGFRFRPTDEELVDFYLRQKINGNGDEV-WVIREIDVCKWEPWDLPGTI----LNSLFFQICQ-WYGT--RIRS----GS-----SSVHRTESGST 105 699************************999.89***************443....3456666654.4544..3322....21.....11222233778 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyr 127 ++g+kktLvfy+grapkg++t+Wvmheyr Aradu.K2UJH 106 VIGMKKTLVFYTGRAPKGKRTNWVMHEYR 134 89**************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-39 | 19 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.83 | 25 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-18 | 26 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 681 aa Download sequence Send to blast |
MGAVEVFQQQ PLVVDAAPVL SLNSLPLGFR FRPTDEELVD FYLRQKINGN GDEVWVIREI 60 DVCKWEPWDL PGTILNSLFF QICQWYGTRI RSGSSSVHRT ESGSTVIGMK KTLVFYTGRA 120 PKGKRTNWVM HEYRPTLQEL DGTNPGQNPY VLCRLFKKQD ESLEGSNGEE MERTTSTNLT 180 ANYSPEEIQS DPAVKSVSSS QATEDDKKLA VIPLTPEEAI SNVITPVGCQ SDGCDAYDAQ 240 NQIAAGDPSK EEDLQVNMDI FYDPSELFDD KLFSPLHKHI PEELFHQSNN EANGHFGLQH 300 QCGTNEISIS DFFDSVINWD EISGDNSSGQ TPNSAWFDVQ HNESWGNSNV DMVHARPLQV 360 GGADYPGDAT EGKLPLLKTR EFNPNTSYDN AISNNMGLFQ DHSQMAFSSD VNMLQGYLAT 420 NNYEQPTNFN MAMANSDNTG IRIRSRPPGY EGPNANSNMQ PQGTAPRRIR LARALAPQHT 480 SNEAAKDSSY ESKDRNSQVT TAREMETSKD LAAGESVTVT SDVEEQESSP VENKEFEDFN 540 TVQQSTSSAS SNLSTCSSDS EVSYEAEKES GWTSEDHSPK PAAAGASKAS EDQVPSECIN 600 DITDDVDESR IPNAYTLEVS KEESFSDSES KDSLLRRKVC YPSKSSSNLA KWYSVIAISA 660 TLVVLLAFLV NTWGYGYYLK V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-24 | 24 | 162 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-24 | 24 | 162 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-24 | 24 | 162 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-24 | 24 | 162 | 16 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-24 | 24 | 162 | 19 | 172 | NAC domain-containing protein 19 |
3swm_B | 3e-24 | 24 | 162 | 19 | 172 | NAC domain-containing protein 19 |
3swm_C | 3e-24 | 24 | 162 | 19 | 172 | NAC domain-containing protein 19 |
3swm_D | 3e-24 | 24 | 162 | 19 | 172 | NAC domain-containing protein 19 |
3swp_A | 3e-24 | 24 | 162 | 19 | 172 | NAC domain-containing protein 19 |
3swp_B | 3e-24 | 24 | 162 | 19 | 172 | NAC domain-containing protein 19 |
3swp_C | 3e-24 | 24 | 162 | 19 | 172 | NAC domain-containing protein 19 |
3swp_D | 3e-24 | 24 | 162 | 19 | 172 | NAC domain-containing protein 19 |
4dul_A | 3e-24 | 24 | 162 | 16 | 169 | NAC domain-containing protein 19 |
4dul_B | 3e-24 | 24 | 162 | 16 | 169 | NAC domain-containing protein 19 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.K2UJH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX569045 | 1e-93 | JX569045.1 Glycine max NAC transcription factor (NAC012) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025609825.1 | 0.0 | protein NTM1-like 9 isoform X1 | ||||
TrEMBL | A0A444YAM6 | 0.0 | A0A444YAM6_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA02G38710.1 | 1e-162 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5551 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49530.1 | 5e-57 | NAC domain containing protein 62 |