PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aradu.JK8QK

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 268aa MW: 30102.1 Da PI: 8.784

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.JK8QK	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	89	111	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Aradu.JK8QK 89 FSCNYCQRKFYSSQALGGHQNAH 111 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.96E-6	86	116	No hit	No description
PROSITE profile	PS50157	11.427	89	116	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	91	111	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MDLQTLENLK KSSSKNKDQD DDQEVKENTT STVLQLDLSL SSNDESRTKQ ELNLLNFLDP 60 NSSENSSDST QEEEEGNKNK NHEMEHRTFS CNYCQRKFYS SQALGGHQNA HKRERTLARR 120 GHHKSPSSSS SSMVDFGYRF SPSFSSSSSS NGSYNKPLGI QLHSMINKPS SQPPFFAMTC 180 RENGWQRQKL YLDSHPANRK LNSNNGLESE SPSSMAVFDG SGGVPRLGKF HPTKLVTQGF 240 GGYWFGSVSH LNSKHENKLQ KLDLSLKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.JK8QK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015938079.1	0.0	zinc finger protein 3-like
TrEMBL	A0A445BQH5	0.0	A0A445BQH5_ARAHY; Uncharacterized protein
STRING	GLYMA08G23210.1	1e-63	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1439	31	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	1e-24	C2H2 family protein