PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB

Protein Properties

Length: 199aa MW: 22723.7 Da PI: 9.5478

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.JK51Z	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.3	1.7e-18	19	66	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l++ ++ +G ++Wkt a + g++R++k+c++rw++yl Aradu.JK51Z 19 RGAWTPEEDDKLARFIEIHGAKRWKTLAVKSGLKRCGKSCRLRWLNYL 66 89********************************************97 PP
2	Myb_DNA-binding	53.3	6.5e-17	72	117	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Aradu.JK51Z 72 RGNITIEEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNHWNSHL 117 789999**************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.982	14	66	IPR017930	Myb domain
SMART	SM00717	1.4E-14	18	68	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.51E-29	18	113	IPR009057	Homeodomain-like
Pfam	PF00249	3.7E-16	19	66	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-23	20	73	IPR009057	Homeodomain-like
CDD	cd00167	5.82E-11	21	66	No hit	No description
PROSITE profile	PS51294	25.76	67	121	IPR017930	Myb domain
SMART	SM00717	7.8E-13	71	119	IPR001005	SANT/Myb domain
Pfam	PF00249	5.1E-15	72	117	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-25	74	121	IPR009057	Homeodomain-like
CDD	cd00167	9.04E-11	78	117	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009957	Biological Process	epidermal cell fate specification
GO:0010090	Biological Process	trichome morphogenesis
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048481	Biological Process	plant ovule development
GO:0048629	Biological Process	trichome patterning
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MAPKNNKKST KISSVMMNRG AWTPEEDDKL ARFIEIHGAK RWKTLAVKSG LKRCGKSCRL 60 RWLNYLRPNI KRGNITIEEE DLILRLHKLL GNRWSLIAGR LPGRTDNEIK NHWNSHLCKK 120 VHPNAGEPST STAKESGATL NNNPNNMEDS EIMLEHNGAI NNGSDENLDI SFDVNEFFNF 180 STEGSFGFDW VNKYLEVRI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	2e-29	16	121	1	105	C-Myb DNA-Binding Domain
1msf_C	2e-29	16	121	1	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.JK51Z

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB490776	4e-75	AB490776.1 Lotus japonicus LjPAP mRNA for R2R3-MYB transcription factor LjPAP, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015962751.1	1e-145	anthocyanin regulatory C1 protein-like
Refseq	XP_025701491.1	1e-145	anthocyanin regulatory C1 protein
Swissprot	Q38850	3e-51	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A445ERS7	1e-144	A0A445ERS7_ARAHY; Uncharacterized protein
STRING	GLYMA05G04900.1	3e-87	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2148	32	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-53	myb domain protein 5

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]