PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.J11NJ
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARR-B
Protein Properties Length: 579aa    MW: 64913.6 Da    PI: 5.8668
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.J11NJgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.84.8e-28174227155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kpr++W+ +LH++Fv aveqL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYR+
  Aradu.J11NJ 174 KPRVVWSVDLHRKFVTAVEQL-GIDKAVPKKILDLMNVEKLTRENVASHLQKYRI 227
                  79*******************.********************************6 PP
2Response_reg37.61.2e-1341063109
                   EESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEE CS
  Response_reg   3 ivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdf 97 
                   i ++++ + +++r+++ +++    +++ ++  al+ll+ek+  +Dl++ D+ mp+mdG++ll+     e++lp+i    ++++  + + +  Ga  +
   Aradu.J11NJ   4 INEKDHHFPKGMRVLAVDDDR-TLTTTNSAITALKLLREKKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI----NDDPRVMMKGIMHGACFY 94 
                   457888888999999998888.99*************887778*******************97754.458***9....899*************** PP

                   EESS--HHHHHH CS
  Response_reg  98 lsKpfdpeelvk 109
                   l+Kp+ +eel +
   Aradu.J11NJ  95 LVKPVRIEELKN 106
                   *********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011021.6491112IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363922.8E-1281576IPR017053Response regulator B-type, plant
SuperFamilySSF521723.56E-2113120IPR011006CheY-like superfamily
SMARTSM004483.4E-715108IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.40E-1618112No hitNo description
PfamPF000721.3E-920106IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.5E-2327141No hitNo description
PROSITE profilePS5129412.453171230IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-29171231IPR009057Homeodomain-like
SuperFamilySSF466896.99E-19172231IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-25174227IPR006447Myb domain, plants
PfamPF002492.9E-6176226IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MAVINEKDHH FPKGMRVLAV DDDRTLTTTN SAITALKLLR EKKNKFDLVI SDVHMPDMDG  60
FKLLELVGLE MDLPVINDDP RVMMKGIMHG ACFYLVKPVR IEELKNIWQH VIRRNKHDSQ  120
EPEKPSNNHE NPDSDQSSKA NKKRKEQEEE EEEEEEEEDE NDHDNGDDPS AQKKPRVVWS  180
VDLHRKFVTA VEQLGIDKAV PKKILDLMNV EKLTRENVAS HLQKYRIFLR RVNNMSNQQH  240
SNIGSGFSSA DTSYLRMNPL SGIGQLQTLN NNSGYGLRSF SPSNMLNRFN TPSALNAHGF  300
NSNDSQFQFP SSGLLGRGRS NNNQIYLPGG GLNSVQNLST IFDSKQSFCR QKPSSPILGV  360
SNNGLILEQN HQGGIYDNIP NSVGSSSQEQ ISFPSLLDHH HGNSCNNDIW SNECNTLMNS  420
STFQGGNLSG ASSITSLSSQ SHDSFTDLNF QGVNFTNINN SNNVQFQGWN SNNNNNNQNG  480
NYHALSGLID PFSNSSFNRN LDFDFCDASQ MKHDGVIDLT EDSSLKPHQL YKTRNTHISN  540
NAGSLEDFVN EIMKQKQDKI KLPEGDFLCD NYSTGGTSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-25170233164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.J11NJ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020981590.10.0two-component response regulator ARR10-like
SwissprotB8AEH12e-96ORR23_ORYSI; Two-component response regulator ORR23
SwissprotQ6K8X62e-96ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A445CWI10.0A0A445CWI1_ARAHY; Two-component response regulator
STRINGGLYMA14G13320.11e-178(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2966122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-89response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]