![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.IU18H | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 342aa MW: 37204.5 Da PI: 6.3908 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.8 | 3.2e-10 | 11 | 55 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W+ e d+ + +a ++ + +W++Ia+ ++ g+t +++k ++ Aradu.IU18H 11 EWSWEQDKAFEEALVTHPDDaldRWEKIAADVP-GKTVEEIKQHYE 55 7*****************99*************.**********95 PP | |||||||
2 | Myb_DNA-binding | 24.2 | 7.8e-08 | 176 | 211 | 12 | 47 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ + ++G+g+W++I+r + +Rt+ q+ s+ qky Aradu.IU18H 176 FLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 211 6667889****************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.166 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 9.8E-9 | 8 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.35E-10 | 10 | 66 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.4E-4 | 11 | 55 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-8 | 11 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.94E-9 | 11 | 58 | No hit | No description |
SMART | SM00717 | 1.8 | 115 | 214 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.5E-10 | 174 | 217 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.3E-11 | 175 | 214 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 9.42E-5 | 175 | 212 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-5 | 176 | 210 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.9E-6 | 176 | 211 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 4.495 | 180 | 212 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 342 aa Download sequence Send to blast |
MTGDEVDSSS EWSWEQDKAF EEALVTHPDD ALDRWEKIAA DVPGKTVEEI KQHYELLVED 60 VNLIESGCVT LPSYNSSLEG SANHASDEGG GKKGKHDSES NHGTKASRSD QERRKGIAWT 120 EDEHSLCFHL VSLFWFEARS QDSVVFCLSF HFSMNHQTVN FDFVVASAFQ IHQWLFLLGL 180 DKYGKGDWRS ISRNFVVTRT PTQVASHAQK YFIRLNSMNK DRRRSSIHDI TSVNNGEVSA 240 PQGPITGQTN GPPPNSAIKS PKQPPPPAST GVPGVGLYSA PTIGQPIGPL VSAVGTPVNL 300 PPPAHIAYGI RAPVPGGAVV PGAPVNMVPM TYQMPGTSAS HR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-16 | 8 | 88 | 7 | 84 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00500 | DAP | Transfer from AT5G08520 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.IU18H |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015947035.1 | 0.0 | transcription factor SRM1 | ||||
Refseq | XP_015947036.1 | 0.0 | transcription factor SRM1 | ||||
Refseq | XP_020988223.1 | 0.0 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 1e-110 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A445B113 | 0.0 | A0A445B113_ARAHY; Uncharacterized protein | ||||
STRING | XP_007153178.1 | 1e-165 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4694 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-103 | MYB family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|