PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.IRX3E
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 488aa    MW: 55821.1 Da    PI: 10.4301
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.IRX3EgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR148.43.1e-1538124191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++ +    +++t+++  ++  a++ ++  k  g w ++k+ l+H+H+++p
  Aradu.IRX3E  38 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGVNGPARIYIHTLKdVGAWIISKVMLDHSHPCCP 124
                  6***************998776..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1238124IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.939275311IPR007527Zinc finger, SWIM-type
SMARTSM005750.0066286313IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MGVFTVLTRC IMQPLSAVDD ELVPKVGMTF TTLEDAGKFY RNYAKAAGFS TRVRCTNRKG  60
NEIKNQLITC SREGKWKSKI SPTEKTNPTA GVNGPARIYI HTLKDVGAWI ISKVMLDHSH  120
PCCPSKAEML KQHRKLSMDE KHTKERERHI WVPIYLDHHF WAGMRSTQRS ESMHSFFNKY  180
ITRTARLFSS SNSTIIASEA GSKQRENQML QIFIRSYRVQ PNPPLKLSFK MHRLMQIQAQ  240
FRGKANCITR LKNSALGYSV YEVIEQVSSS IFNKFAVTYD SVAAEVKCQC LLFESRGILC  300
RHALNMLSFE QVSQVSPRYI LERWSKKVKR RHTHIKSSHD EPRMESRSKR FDQLIFRSQN  360
ICEFASESEE LTTILHRAYD NTMAEMEALK AKRKGTSSLS HEDANLESVN ELQSSPRIRT  420
RGRPKNRLGS KLEKQIANAT KKKKTKVLSE INLFDAASAA HSNCSQYQGH VINYQFRVPA  480
AGDNSLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.IRX3E
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.11e-179protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445CUV20.0A0A445CUV2_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-22far-red elongated hypocotyls 3