PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Aradu.IJ9YQ

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 224aa MW: 25239.4 Da PI: 10.0232

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.IJ9YQ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11	0.0013	73	95	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+++F ++ L H++ H Aradu.IJ9YQ 73 FPCLFCSRTFYSSQALGGHQNAH 95 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.01E-6	70	100	No hit	No description
PROSITE profile	PS50157	11.011	73	100	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	75	95	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
SKAKKQTQIS THIETLLFFE SLYLFTFQPF VFFLLQFILI CSHIPQDSEM GDKKNPTKVG 60 GESPREDATR RVFPCLFCSR TFYSSQALGG HQNAHKKERT AARRSQKYSQ PSPNPPPMAF 120 APTLHQLGVF NSNPSMFITA HAANLHCLQN NQIHEQFGSN NGAPRFGNYP FLQGRRISSN 180 SNGFSDGDGE KGYCGKWQSS IRSSNSNVGI RREKEHKLDL SLHL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.IJ9YQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025626097.1	1e-129	protein LATE FLOWERING-like
TrEMBL	A0A445ECH0	1e-128	A0A445ECH0_ARAHY; Uncharacterized protein
STRING	GLYMA08G47140.2	2e-48	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25160.1	7e-15	zinc finger protein 3