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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.I92X3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 552aa MW: 60788.8 Da PI: 7.7505 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.8 | 7.1e-17 | 336 | 382 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ +L++l+P++ K +Ka++Le+A+eY+ksLq Aradu.I92X3 336 VHNLSERRRRDRINEKMRTLQQLIPNS-----NKTDKASMLEEAIEYLKSLQ 382 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-20 | 329 | 395 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.463 | 332 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.41E-18 | 335 | 386 | No hit | No description |
Pfam | PF00010 | 2.6E-14 | 336 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-19 | 336 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-17 | 338 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010244 | Biological Process | response to low fluence blue light stimulus by blue low-fluence system | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0010928 | Biological Process | regulation of auxin mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 552 aa Download sequence Send to blast |
MMNNNSTIPG WNFESDACVI NQKSPIGLDQ DLVELLWKNG QVVLSSQTQR KPVQKSDASS 60 TLRNGVHCGN SSSNLSQQED ETASWIQYQV EDHPMGQELC SSNLLSQLTP CEVEAYKPIK 120 QLEEPKFAKF ATPNANLSPQ QQNNNTKPIN PMPAPRFQVA PDSSNQKTND FVGGSSSSQK 180 VPKFSHHFSA PAQQKFREKV NGNNNVLQSE GRECSVMTVG SSHCGSNNII PQEQDTTFSE 240 AVKDCVQRSV PNWSNNKGKS SEMIEATVTS SSGGSGSSLG KTTCSLSTGN HLSLKRKITD 300 ADESEEQSEA TQPKSGVGNK TSQRSGSSRR NRAAEVHNLS ERRRRDRINE KMRTLQQLIP 360 NSNKTDKASM LEEAIEYLKS LQLQLQVMWM GAGMTPVMFP GIQHYMSQMS AMGMAAASQP 420 SLPSMQNPMQ IPRMPLDQSN IPSTVSVPHH QTPSNQALMC QNPVLGAFNY QNHQMQNPCL 480 ADQYARYMAY HHLMQTASQP MNVFGYGSQA VQQSQTMMPP SNNNGTMNVA PNFEDAITAK 540 MGTSTFQQLN NN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 340 | 345 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00606 | ChIP-seq | Transfer from AT2G43010 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.I92X3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015973330.1 | 0.0 | transcription factor PIF4 | ||||
Refseq | XP_015973331.1 | 0.0 | transcription factor PIF4 | ||||
Refseq | XP_015973332.1 | 0.0 | transcription factor PIF4 | ||||
Refseq | XP_015973333.1 | 0.0 | transcription factor PIF4 | ||||
TrEMBL | A0A445C3W4 | 0.0 | A0A445C3W4_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA02G45150.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8146 | 29 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43010.2 | 2e-61 | phytochrome interacting factor 4 |