PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.I7M78
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 780aa    MW: 87555.3 Da    PI: 7.1773
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.I7M78genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.2e-085173326
                 S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                 t++Cr+fa  G C++G+ C+F H+
  Aradu.I7M78 51 TRPCRDFAV-GNCRRGSHCHFLHD 73
                 89*******.*************7 PP
2zf-CCCH18.24.4e-06178198526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f+++G C+ G +C+F+H+
  Aradu.I7M78 178 PCK-FFAFGNCRNGKNCRFSHD 198
                  799.8888*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.3664875IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-55074IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-55173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-65174IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.042108135IPR000571Zinc finger, CCCH-type
SMARTSM003560.58109134IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-4173199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6176198IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709178200IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MSEPGRKHSS RRDLRDDAEF ARSSRSRSPA CDFRWDSEAS DRKRMRSGGS TRPCRDFAVG  60
NCRRGSHCHF LHDDNQNYDD GWESRSRQDR ALRYSAPHEG GDYSLRSGRS NDACINFAKG  120
WCRMGASCKY VHHHNNSDGF REISVAESTR EREIDRRHME SSYEWDGAHR PNHSGDIPCK  180
FFAFGNCRNG KNCRFSHDSQ AFQRPNRSLR DDRTSYYGEH EALDIQKLND SISPNGRLRD  240
DRCGFKSNMA DVDEAWDGPE KNDLGAVVDT ENLVEDNTNR ISGATEPSFT HRPMNDVLDC  300
RLDKGRVHAQ SPFPSAKNDT NYWETQKAGD NMRSTQSINT VIWPGDEKMS PDWKFGVGSF  360
CGTEEKHEQN KQEVTPGQRF NQNAQDLNAS SCQVVGQSQM PVSVAASRVG IVEGMQNQEI  420
NVEKKYTAEP NIMEAILSQI SSRDPLSQNM VSKERLAQLT SISATLAHII GSAKQLPQLN  480
ATSNSHDARD TPLLGKSEGS YSNNKPVFTF AKSDPAVGSQ KQYDPICDSI ETKDAHANGV  540
PPYFSPIVKI INEAEEIPAP SSKSTRQNLD YSRKTAFPEG PLVKCDHSIQ LQQQGENIEI  600
NKEKDVVIAE EKQSLQCAKE ITKENIPMEN MDQTGGTDEA KKTKDVKGVR AFKYSLVEFV  660
KELLKPTWKE GQITKEDYKS IVKKVADKVV GTVQRAHIPQ TQEKIDHYLS LSKPKLNKLL  720
QVSGGSLTSF HYMCEAFQIL CPISFSFIDQ PLPMCNSSNS FQGICRKGTE GIGMCRNLAV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.I7M78
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015955894.10.0zinc finger CCCH domain-containing protein 38 isoform X1
TrEMBLA0A371E8B70.0A0A371E8B7_MUCPR; Zinc finger CCCH domain-containing protein 38 (Fragment)
STRINGXP_007137708.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-12C3H family protein