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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Aradu.HU5GE |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
Family |
CO-like |
Protein Properties |
Length: 370aa MW: 41278.9 Da PI: 6.4494 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Aradu.HU5GE | genome | NCGR_PGC | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 20.9 | 7.4e-07 | 23 | 66 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+ C+ +++ + l+C+ ++ lC +C e H+ Ht++
Aradu.HU5GE 23 PSPCDYCNSSRSVLYCRADSAKLCFKCDREVHSTnqlfskHTRT 66
568*****************************668888888876 PP
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2 | zf-B_box | 20.8 | 8.1e-07 | 68 | 107 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
C+ + + ++++ C + ++ lC++C e+H + H++
Aradu.HU5GE 68 LCDSCYDSPASILCSTESSVLCHNCDWESH-NlslptvHER 107
7*****************************.5577777765 PP
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3 | CCT | 59.6 | 1e-20 | 326 | 368 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43
R+ allRYk+K+ktR++eK+irYesRK++A+sR RvKGrF+k
Aradu.HU5GE 326 RDSALLRYKQKKKTRRYEKHIRYESRKVRAQSRIRVKGRFAKM 368
899**************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 370 aa
Download sequence Send
to blast |
MTGSHQNSTH SASHTQQDKA STPSPCDYCN SSRSVLYCRA DSAKLCFKCD REVHSTNQLF 60 SKHTRTLLCD SCYDSPASIL CSTESSVLCH NCDWESHNLS LPTVHERGPL EGFTACPSVS 120 ELLTILGFED VGKKALLYGD GGGGGDGGGG EKNSADDFMG CEIEGFSDFF VWDAPSVVSL 180 DDLISSSAPS HNFQAMEVPP LPKNRKSSCG RHREEILSQL RELAKSEPLD LDSEQQQYLQ 240 SGNMSTDLEH DFKTDKFPSY EWHRRSSEPM NQVVPLNTLL NEEVAVEHPT SAVSENNEGK 300 TPISFKSETV SVVPKATPCE LTSQERDSAL LRYKQKKKTR RYEKHIRYES RKVRAQSRIR 360 VKGRFAKMEH
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | GQ864263 | 2e-50 | GQ864263.1 Glycine max CONSTANS-like zinc finger protein (COL9) mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT2G47890.1 | 2e-81 | B-box type zinc finger protein with CCT domain |