PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.HEX80
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 552aa    MW: 63472.7 Da    PI: 7.5531
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.HEX80genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1501e-1574160186
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHn 86 
                  +fYn+Y+   GF +rk+ + +  ++g+i++r++vC+keg r+ +  + ++++r+ r+ trt+C a+l+vk+++  g w+ t ++  Hn
  Aradu.HEX80  74 QFYNTYSCWHGFVMRKDDMVRD-NQGRIISRQLVCNKEGWRNVRYLDlDDRSREARSLTRTKCPARLRVKLDYgYGIWKNTLIDFMHN 160
                  6*****************9998.8888***************999887889999*******************99***9999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.8E-1474160IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.076245281IPR007527Zinc finger, SWIM-type
SMARTSM005753.7E-6256283IPR006564Zinc finger, PMZ-type
PfamPF044341.5E-4257273IPR007527Zinc finger, SWIM-type
Gene3DG3DSA:4.10.60.101.3E-5323330IPR001878Zinc finger, CCHC-type
SuperFamilySSF577561.51E-6383415IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.101.3E-5392412IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.614397412IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MSINEVDVKN DSDNDLGDDF DYQPNVEDDA EDDDVDSLDS TSKSEEVCGV KRIADLMVED  60
IWNLEFRTED EACQFYNTYS CWHGFVMRKD DMVRDNQGRI ISRQLVCNKE GWRNVRYLDL  120
DDRSREARSL TRTKCPARLR VKLDYGYGIW KNTLIDFMHN LDRALKEYRN NELIADFKSQ  180
LSEPVMITSL EVYERSASCY FTRNIFKEIR NEIQRAGALN IKVLSTTLDK VEFSVTALGD  240
PAKDRRVEVD RGKNLFSCSC KMFESRGIPC SHVFCAMKFE NILEFPDSLI YKRWTKNAKN  300
EFIITEMPVN DDIERVLKFR VGALASNCNK LCDIACKDLA DFDEVQSELV NLVIHLQSRK  360
QGKSTPNVNV EGINDPFVVK SKGAPSKRSS WRKKRACSNC HKYGHYYKRC PDLMQHSVEG  420
KPHNRSDGNA SAKDSVFSPE RFGNSLRSIS VKSEHHLGPK TKPFKKGGTR KFTATGMRNR  480
KGKDNTFDEV KEPQQDKRHS FMNYECVNDV IDEKCDTPHV QIDVRDPLPS SLPCGNKQGS  540
YMALFASMHR TL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.HEX80
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371770.0HQ637177.1 Arachis hypogaea clone AHF-303L13 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020987595.10.0protein FAR1-RELATED SEQUENCE 9-like
TrEMBLA0A445BJ840.0A0A445BJ84_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF845424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-16FAR1-related sequence 5