PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.H5REB
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 367aa    MW: 39670 Da    PI: 5.4865
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.H5REBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.92.5e-36291202102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+++ed++++++isw+++g++f+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++i+
   Aradu.H5REB  29 FLTKTYQLVEDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKRLLCEIQ 116
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Aradu.H5REB 117 RRKI 120
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3721113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.4E-5725118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.57E-3526118IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.9E-202952IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3229118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-208092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MTPPPPTPVD TSDSPATGGE SQRSIPTPFL TKTYQLVEDQ SIDDVISWND DGSTFIVWNP  60
TVFARDLLPK YFKHNNFSSF VRQLNTYGFR KVVPDRWEFS NDCFRRGEKR LLCEIQRRKI  120
STPSPSPSPT AAGIATATVA VPSPMPLTAI PTAMPIISPS NSGDEQVISS SSSPSRAPAE  180
LLDENERLRK ENVQLTKELA EMRSLCNNIF SLMSNYATTN AATTTTTNNS NSNQIDGSAQ  240
GSRDSAFTAV RPLDLMPVKR SSSGEPWTET ATAMMVEEMN PKLFGVAIGA KRAREGGGGG  300
GEGGGGGGGG SAGGRAGEED TLLRLHQPGY ADVKSEPLDC QNHRDNSSNQ ETPWLNQCHR  360
ANQRVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A8e-252911810110Heat shock factor protein 1
5hdn_A8e-252911810110Heat shock factor protein 1
5hdn_B8e-252911810110Heat shock factor protein 1
5hdn_C8e-252911810110Heat shock factor protein 1
5hdn_D8e-252911810110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.H5REB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015967448.10.0heat stress transcription factor B-2b
SwissprotQ6Z9C84e-90HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A445CZB60.0A0A445CZB6_ARAHY; Uncharacterized protein
STRINGXP_007152318.11e-174(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-78heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]