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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.H2YS3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 226aa MW: 26137 Da PI: 7.9126 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 100.1 | 3.2e-31 | 23 | 100 | 53 | 129 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd++v + ++e+vg++ktLvfy++rap+g kt W+mhe+rle Aradu.H2YS3 23 LNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVQDPlTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 100 3678*************************************9999999***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 38.951 | 1 | 118 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.7E-38 | 20 | 118 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-15 | 23 | 99 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MISELLRSNG VMKYVVYAEV AKLNANEWYF FSFRDRKYAT GFRTNRATTS GYWKATGKDR 60 TVQDPLTQEV VGMRKTLVFY RNRAPNGIKT GWIMHEFRLE TPHMPPKEDW VLCRVFHKSK 120 EENSGKLIMY DSISTHHESS NSMALVSTHH LNPINNHNAM NNFLHHFSSS RDDSQTNNAN 180 NNNNNSPKGY DGYGFIWDHM DLEDHSVPSS DFQVDNNNNN NNIALL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-28 | 21 | 118 | 66 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-28 | 21 | 118 | 66 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-28 | 21 | 118 | 66 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-28 | 21 | 118 | 66 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-28 | 21 | 118 | 69 | 168 | NAC domain-containing protein 19 |
3swm_B | 9e-28 | 21 | 118 | 69 | 168 | NAC domain-containing protein 19 |
3swm_C | 9e-28 | 21 | 118 | 69 | 168 | NAC domain-containing protein 19 |
3swm_D | 9e-28 | 21 | 118 | 69 | 168 | NAC domain-containing protein 19 |
3swp_A | 9e-28 | 21 | 118 | 69 | 168 | NAC domain-containing protein 19 |
3swp_B | 9e-28 | 21 | 118 | 69 | 168 | NAC domain-containing protein 19 |
3swp_C | 9e-28 | 21 | 118 | 69 | 168 | NAC domain-containing protein 19 |
3swp_D | 9e-28 | 21 | 118 | 69 | 168 | NAC domain-containing protein 19 |
4dul_A | 8e-28 | 21 | 118 | 66 | 165 | NAC domain-containing protein 19 |
4dul_B | 8e-28 | 21 | 118 | 66 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.H2YS3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015968039.1 | 1e-154 | protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q84TE6 | 1e-42 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A445CPS7 | 1e-138 | A0A445CPS7_ARAHY; Uncharacterized protein | ||||
STRING | XP_007162552.1 | 1e-84 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4381 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 9e-63 | NAC domain containing protein 74 |