![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.G8KNY | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 993aa MW: 110098 Da PI: 5.966 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 180.9 | 1.5e-56 | 14 | 129 | 3 | 117 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 +e ++rwlk+ e++ iL+n++k+++t+e++++p+sgsl+L+nr+++r+fr+DG++w+kkkdg+tv E+he+LKvg+ve+l+cyYah+e+nptfqrr+y Aradu.G8KNY 14 QEaQSRWLKPVEVMYILQNHDKYQFTQEPPQQPTSGSLFLFNRRVLRFFRRDGHNWRKKKDGRTVGEAHERLKVGTVEALNCYYAHGEQNPTFQRRSY 111 5669********************************************************************************************** PP CG-1 100 wlLeeelekivlvhylev 117 w+L+ ++e+ivlvhy+e+ Aradu.G8KNY 112 WMLDPAFEHIVLVHYRET 129 ****************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 83.616 | 9 | 135 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 6.2E-77 | 12 | 130 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.6E-48 | 15 | 128 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 8.7E-9 | 426 | 515 | IPR013783 | Immunoglobulin-like fold |
CDD | cd00102 | 8.50E-5 | 427 | 511 | No hit | No description |
Pfam | PF01833 | 1.6E-8 | 428 | 510 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 2.1E-17 | 428 | 511 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:1.25.40.20 | 2.0E-16 | 621 | 718 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.273 | 623 | 727 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 9.95E-17 | 625 | 717 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.11E-13 | 628 | 715 | No hit | No description |
Pfam | PF12796 | 2.4E-8 | 643 | 718 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0071 | 656 | 685 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.606 | 656 | 688 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 940 | 695 | 724 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 110 | 773 | 795 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.584 | 774 | 803 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 3.72E-8 | 822 | 877 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.45 | 830 | 852 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.444 | 831 | 860 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.025 | 833 | 851 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 2.7E-5 | 853 | 875 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.212 | 854 | 879 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 3.0E-5 | 856 | 875 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 993 aa Download sequence Send to blast |
MATGDDYNID DLFQEAQSRW LKPVEVMYIL QNHDKYQFTQ EPPQQPTSGS LFLFNRRVLR 60 FFRRDGHNWR KKKDGRTVGE AHERLKVGTV EALNCYYAHG EQNPTFQRRS YWMLDPAFEH 120 IVLVHYRETS EGRSSSGPGT QLSPSSSSAF GQSPSSYSAQ TPLSTSVLGD PYEPNQSYSS 180 SGTGEVTSDV FIMNDGMSHL DGTYADSGTS TEVEVTRALL RRLEEQLSLN EDSIKEIASF 240 YGEKEITGDS NAQQNQGLTC KQEESAAFAR PDDYGLIFYG HNGTQDEGDK SYELMDHTYR 300 DGNEKDIWTE VLESCKSSST ARLPQKNVYM PAGKYLKQEN SPSSSRKEPI ANQDDSHWLN 360 FNSNNTENSV FSLPEGDSGV EYPPYSSVLE AQKANSEYYA TLFAQSQIGP SLDADSSLTV 420 SQKQKFSIKA VSPEWGYTTE TTKIIIVGSF LCHPSDSAWA CMFGDVEVPI EIIQDGVISC 480 EAPSRLSGKV NLCITSGNRQ SCSEVREFEY RNKTSICTYC NSSATEANRS PEELLLLVRF 540 AQMLLSGSTT KNDDIESGTH LVKQKADDDS WSHIIEALLV GSGTSSGMVD WLLEELLKDK 600 LQLWLSCRSQ EKDEVTGCCL SKKEQGIIHM LAGLGFEWAL HPILSCGVNI NFRDINGWTA 660 LHWAARFGRE KMVASLIACG ASAGAVTDPS AQDPKGKTAA SIAASSGHKG LAGYLSERAL 720 TSHLSSLTLQ ESELSKSSAQ FEADLAVSSV SKENLAAGED QAPLKHTLAA VRNATQAAAR 780 IQSAFRSHSF RKRRAREAAA ATAGGINAGS IGNIPELSAM SKLAFRNSRD HNSAALSIQK 840 KFRGWKGRKD FLELRQKVVK IQAHVRGYQV RKHYKVIWAV GILDKVVLRW RRKGAGLRGF 900 RQEMETSALD ESEDEDILKP FRKQMVDAEI KEAVSRVLSM VDSPDARQQY HRMLEKYRQA 960 KAELAGTSEE ASLSTSIADV FSMEDDMYQF PQG |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.G8KNY |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015958017.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X4 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A444ZS00 | 0.0 | A0A444ZS00_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA05G28090.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4548 | 29 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67310.1 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
---|---|---|---|
|