PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.G7UXI
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 295aa    MW: 32725.1 Da    PI: 9.7043
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.G7UXIgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12.1e-183378147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+WT++Ed  l+++v+q+G ++W+ I++ ++ gR++k+c++rw + 
      Aradu.G7UXI 33 KGSWTPQEDATLLKLVAQHGARNWSVISNGIP-GRSGKSCRLRWCNQ 78
                     799*****************************.***********985 PP
2Myb_DNA-binding55.71.1e-1787129347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ede++++a++ +G++ W+tI+r ++ gRt++ +k++w++ 
      Aradu.G7UXI  87 PFTPAEDEIILKAHAVHGNK-WATISRLLP-GRTDNAIKNHWNST 129
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.1012879IPR017930Myb domain
SuperFamilySSF466891.98E-3030126IPR009057Homeodomain-like
SMARTSM007178.4E-163281IPR001005SANT/Myb domain
PfamPF002494.2E-183378IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-253486IPR009057Homeodomain-like
CDDcd001673.06E-143577No hitNo description
PROSITE profilePS5129426.31380134IPR017930Myb domain
SMARTSM007175.8E-1584132IPR001005SANT/Myb domain
PfamPF002491.2E-1487129IPR001005SANT/Myb domain
CDDcd001671.05E-1187130No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2387133IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MPQTKSSKRK ALFKVAMMIQ DNTKFDEEAD RIKGSWTPQE DATLLKLVAQ HGARNWSVIS  60
NGIPGRSGKS CRLRWCNQLS PDVQHRPFTP AEDEIILKAH AVHGNKWATI SRLLPGRTDN  120
AIKNHWNSTL RRRKGVTVAF SGAGFPSAAA TDASTSGGLS GFSSAATSSS SDFSPTFVCQ  180
KRKGEQLELP QNFMKKPCLA AVAVDSHAEE EVRQKRKAEE EEEGGVTTLS LLPPGEKPLG  240
AEGVWRKEEE VNPYGEHAWL MKMMRPMIAE EVRRYIQSLQ KAQPLFDPDP PSKNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-37321333104MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-37321333104C-Myb DNA-Binding Domain
1msf_C9e-37321333104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.G7UXI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020983032.10.0transcription factor MYB44-like isoform X1
TrEMBLA0A445C5820.0A0A445C582_ARAHY; Uncharacterized protein
STRINGXP_004491024.11e-71(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.14e-53myb domain protein r1