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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.G26I2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 29000.4 Da PI: 6.6748 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 20 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv v ++G + W+ Ia+ g++Rt+k+c++rw +yl Aradu.G26I2 20 KGPWTEQEDLKLVSFVGLFGDRKWDFIAKVSGLNRTGKSCRLRWVNYL 67 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.9 | 3.1e-15 | 73 | 118 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+ E++l +d++ ++G++ W++Iar+++ gRt++++k+++++++ Aradu.G26I2 73 RGKLTPFEEKLVLDLHSKWGNR-WSRIARKLP-GRTDNEIKNYFRTHM 118 78999*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-20 | 12 | 70 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.775 | 15 | 71 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-28 | 18 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-14 | 19 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-15 | 20 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.80E-10 | 22 | 67 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-22 | 71 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.59 | 72 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-13 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-13 | 73 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.17E-9 | 80 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MGKMVNEEQQ KQSQKQEFRK GPWTEQEDLK LVSFVGLFGD RKWDFIAKVS GLNRTGKSCR 60 LRWVNYLHPG LKRGKLTPFE EKLVLDLHSK WGNRWSRIAR KLPGRTDNEI KNYFRTHMRK 120 KAQEEKRALA SPSSSSCHSS LSSNNNNNQA VDSHASKKAG EESFYDTGGP VMTVDCSTDL 180 KEEEGFSMDD IWKDIELCEE KNIVVYDGNK SEEGCNFSSP PSWEYSSDPL WVMDEQSVLF 240 PTSDPYFSSF LTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-26 | 17 | 122 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 8e-26 | 17 | 122 | 55 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 8e-26 | 17 | 122 | 55 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.G26I2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF208669 | 0.0 | KF208669.1 UNVERIFIED: Arachis hypogaea putative MYB-related protein 15-like (MYB15) gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015935685.2 | 0.0 | transcription factor MYB48 isoform X1 | ||||
Refseq | XP_020964248.1 | 0.0 | transcription factor MYB48 isoform X2 | ||||
Refseq | XP_025613946.1 | 0.0 | transcription factor MYB48 isoform X1 | ||||
Refseq | XP_025671646.1 | 0.0 | transcription factor MYB48 isoform X2 | ||||
Swissprot | Q9LX82 | 8e-82 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A444Y825 | 0.0 | A0A444Y825_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445BW03 | 0.0 | A0A445BW03_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA15G04620.1 | 1e-114 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4378 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 7e-83 | myb domain protein 48 |
Publications ? help Back to Top | |||
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