PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.G1NHG
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 520aa    MW: 56955.2 Da    PI: 4.6854
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.G1NHGgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.36.8e-35371422102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.....XTTSEEEEESXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.....kekiweFkhksFkkgkkel 93 
                   Fl+k+y++++d++++ ++sws+++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+Y  +k k ++++s++     +++ weF+++ F +g+k+l
   Aradu.G1NHG  37 FLSKTYDMVDDPSTDAIVSWSATNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYMEQKRKIDKESSSQgfrkvDPDRWEFANEGFLRGQKHL 133
                   9********************999************************************99999999887776665449***************** PP

                   XXXXXXXXX CS
  HSF_DNA-bind  94 lekikrkks 102
                   l++i r+k 
   Aradu.G1NHG 134 LRNITRRKP 142
                   ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.86E-3432140IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.3E-5833140IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.4E-3834140IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.9E-3037140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-163760IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-167587IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-1688100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MDASTSGGDG GGGGSTNGAT PAPAPVPIPN ANAPPPFLSK TYDMVDDPST DAIVSWSATN  60
NSFVVWNPPE FARDLLPKYF KHNNFSSFVR QLNTYMEQKR KIDKESSSQG FRKVDPDRWE  120
FANEGFLRGQ KHLLRNITRR KPAHGHHQQS QQSHVQNSSV GACVEVGKFG LEEEVERLKR  180
DKNVLMQELV RLKQQQQTTD GQLQTMVQRL QGMEQRQQQM MSFLAKAVQS PGFFAQFVQQ  240
QNENNRRISE VNKKRRLKQE GIAETDSAAA PDGQIVKYQP LINDSAKAML RQIMKWDTSR  300
AESFSKDPDN YLIGDGSSSS SGAMDSGSSS SWTSGVTLQE VPPTSVQSSH VPITPGAPGH  360
VPSAAKPEIQ SLPQAGVPEK VTRVGASDIP SIHVPQADVI MPDLAPIDEI ESGSMLGIPE  420
DNYMAPEAGD EGFMDPDSLG VSGSFPIDFE GISPDADLDD FLGNPSIWDD LLQTPVQEDT  480
ETDIEASKVN EVQPAENGWD KTQHLDQLTK QMGHLSSEAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-25121404129Heat shock factor protein 1
5d5v_B2e-25121404129Heat shock factor protein 1
5d5v_D2e-25121404129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251258NKKRRLKQ
2252257KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.G1NHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020978414.10.0heat shock factor protein HSF8 isoform X1
SwissprotQ401521e-168HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A444WVL70.0A0A444WVL7_ARAHY; Uncharacterized protein
STRINGXP_004512501.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-117heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]