PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.FTH70
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 403aa    MW: 45587.4 Da    PI: 6.7145
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.FTH70genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.2e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++q+G+g +W + + ++g++R++k+c++rw++yl
      Aradu.FTH70 14 KGPWSPEEDAKLKSYIQQHGTGgNWIALPPKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding38.72.4e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
      Aradu.FTH70  69 GDFSEEEDNIICSLYVSIGSR-WSVIAAQLP-GRTDNDIKNYWNT 111
                      689******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.66962IPR017930Myb domain
SuperFamilySSF466893.44E-2611109IPR009057Homeodomain-like
SMARTSM007172.1E-121364IPR001005SANT/Myb domain
PfamPF002496.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-241569IPR009057Homeodomain-like
CDDcd001675.26E-91662No hitNo description
PROSITE profilePS5129421.82563117IPR017930Myb domain
SMARTSM007171.6E-1167115IPR001005SANT/Myb domain
PfamPF002493.6E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-2470117IPR009057Homeodomain-like
CDDcd001675.01E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIQ QHGTGGNWIA LPPKIGLKRC GKSCRLRWLN  60
YLRPNLKHGD FSEEEDNIIC SLYVSIGSRW SVIAAQLPGR TDNDIKNYWN TRLKKKLLGN  120
NKNRRNKEQQ HLQACSNNGI NKQQETSSIN GGSVIIGDDS FSSLLVHENS STTHQQQQQQ  180
CYWPHFMPVL PIPNLPYSTT NNNQQFYLGS SFNDQDSIKK LLIKLGGRFH NDVDYDNYHP  240
TLGDGLLNHL HQSQGTTTTT YYSNNSTQQQ VVYHQEQIQF DDGNNGLHHD EMVQRKGNLN  300
NEIEEEMVGN TNFIPQRLLN NGLEFLHGDM VFSEDKIIIG SSTTRPNWGE NSSGNSVIDH  360
PLISSSNYQE DEGVRASEEC GLQEYSTIAT MRSNSSNSML HVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.FTH70
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015972391.10.0transcription factor RAX3-like
RefseqXP_015972392.10.0transcription factor RAX3-like
SwissprotQ9M2Y91e-78RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A444YVW70.0A0A444YVW7_ARAHY; Uncharacterized protein
STRINGGLYMA06G05260.11e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.17e-72myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]