PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.FPS72
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 494aa    MW: 56188.8 Da    PI: 8.9526
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.FPS72genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1561.3e-1750136191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++  +++   +ei+++  +Cs+egk +++ +    +++t+++  ++C a++ ++  k  g w ++k++l+H+H+++p
  Aradu.FPS72  50 KFYRNYAKAAGFSTRVRCINRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGVNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 136
                  6****************98887..8889*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.6E-1550136IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.976282318IPR007527Zinc finger, SWIM-type
PfamPF044349.4E-4291315IPR007527Zinc finger, SWIM-type
SMARTSM005750.0024293320IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MDHSTSDCQL NPGEVDYEFK SNEVPEPLTV DDELVPKVGM TFTTLEDAGK FYRNYAKAAG  60
FSTRVRCINR KGNEIKNQLI TCSREGKWKS KISPTEKTNP TAGVNCPARI YIHTLKDVGA  120
WIISKVVLDH SHPCCPSKAE MLKQHRELSM SICRTIENND EADHHFWAGM RSTQRSERMH  180
SFFNKYITRN SLLIQFVKQY DNCLGSREQA ERKSDAANFH TIIPCVTKSS IEAQFQDAYT  240
HAKFREVQAG KANCITRLKN SALGYSVYEV VEQVSSSIFN KFAVTYDSVA AEVKCQCLLF  300
ESRRILCRHA LSVLSFEQVS QVSPRYILER WSKKSSHDEP LMEPRSKRFD QLIFRSQNIC  360
EFASESEELT AILHRAYDNT MAEMEALKAK RKGTSSLSHK DANLESVNEL QSPPRIRTRG  420
RPKNRLGSKL EKQIANATKK KKTKVLSELM RECYIQINLF DAASAAHSNC SQYQGHVINY  480
QFRVPAAGDH SLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.FPS72
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-22far-red elongated hypocotyls 3