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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.FJ441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 204aa MW: 22520.9 Da PI: 8.5088 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.1 | 8.7e-10 | 51 | 95 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K + a++L + v+Y+k L Aradu.FJ441 51 HSIAERLRRERIAERMKALQELVPSiN------KTDRAAMLDEIVDYVKFL 95 99***********************77......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.43E-10 | 44 | 100 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-15 | 44 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.126 | 46 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-15 | 48 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-7 | 51 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.9E-11 | 52 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MSFILDLRRL ALQAFQRQQA PNPVSVTALP QQPPGIRPRV RARRGQATDP HSIAERLRRE 60 RIAERMKALQ ELVPSINKTD RAAMLDEIVD YVKFLRLQVK VLSMSRLGGA GAVAQLVADV 120 PLSAVEQGEE IEGGGNNEQA WEKWSNDGTE QQVAKLMEED VGAAMQFLQS KALCIMPISL 180 ASAIFRMPPS EPSSLIKPES NSHS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 55 | 60 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.FJ441 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015940064.1 | 1e-136 | transcription factor UNE12 isoform X1 | ||||
Refseq | XP_025619248.1 | 1e-136 | uncharacterized protein LOC112710959 isoform X1 | ||||
Swissprot | O22768 | 8e-83 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A445BJY5 | 1e-136 | A0A445BJY5_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445BJZ8 | 1e-134 | A0A445BJZ8_ARAHY; Uncharacterized protein | ||||
STRING | XP_004496017.1 | 1e-111 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11205 | 32 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 3e-68 | bHLH family protein |
Publications ? help Back to Top | |||
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