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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.FEY54 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 501aa MW: 57106.2 Da PI: 9.6779 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.4 | 1.7e-10 | 339 | 385 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + E++RR+++N ++ Lr+l+P++ +K++ a+++ + eYI++L Aradu.FEY54 339 TKHLATEKQRREQLNGKYKILRSLIPSP-----TKMDRASVVGDVNEYIREL 385 68999***********************.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR00142 | 1.3E-11 | 246 | 275 | IPR013765 | DNA recombination and repair protein RecA |
Pfam | PF00154 | 1.9E-17 | 260 | 328 | IPR013765 | DNA recombination and repair protein RecA |
Gene3D | G3DSA:3.40.50.300 | 2.0E-4 | 264 | 322 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PRINTS | PR00142 | 1.3E-11 | 284 | 313 | IPR013765 | DNA recombination and repair protein RecA |
SuperFamily | SSF47459 | 9.81E-12 | 334 | 392 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.005 | 336 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.26E-7 | 339 | 388 | No hit | No description |
Pfam | PF00010 | 4.1E-8 | 339 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.3E-10 | 339 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-8 | 342 | 391 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MLQRLLRRRS APVTAPATIC LAELSSDEIV CSLQRRSPLL QRRFSSGNNL RKRARNFIKL 60 YEICCAFPPT IFSYGDLLHQ RFSSMRSVAQ VFPVASSCIL RLFHLYRASL SIWVFDFLPC 120 QKKLEQLDPA PKSDDRPAKR SRLKSLRDSD SAALEISKEE LDFRNLLEKD LEKFNKFLVE 180 KEEEYIIRLE ELQDRVAKVN VSSEELMKIR KEIGALHVSL VEAVRPYTIL RTSPYCKRIF 240 SRSLLKNDDT NICFRGFWSI LSCVAALVPK GELDGEIGDA HMAMQARLMS QALQKLSHSL 300 SVSQCMLIFI NQQLSQYRTC FGGFRVTTSV GKKREGKGTK HLATEKQRRE QLNGKYKILR 360 SLIPSPTKMD RASVVGDVNE YIRELLKMKA KDDATESCNI KSFSNPDRCI RTSWLQRKLK 420 DSEVDVQIAD DDVTIKLFQR KKVNCLLSVA KFLDELQLEL HHVAGGHIIE GSSVYARAIA 480 NSVIDVMDTQ YAAAVPHTGS Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n03_A | 2e-13 | 260 | 329 | 142 | 211 | RecA protein |
1n03_B | 2e-13 | 260 | 329 | 142 | 211 | RecA protein |
1n03_C | 2e-13 | 260 | 329 | 142 | 211 | RecA protein |
1n03_D | 2e-13 | 260 | 329 | 142 | 211 | RecA protein |
1n03_E | 2e-13 | 260 | 329 | 142 | 211 | RecA protein |
1n03_F | 2e-13 | 260 | 329 | 142 | 211 | RecA protein |
1n03_G | 2e-13 | 260 | 329 | 142 | 211 | RecA protein |
1rea_A | 2e-13 | 260 | 329 | 142 | 211 | REC A |
2reb_A | 2e-13 | 260 | 329 | 142 | 211 | REC A |
2rec_A | 2e-13 | 260 | 329 | 143 | 212 | RECA |
2rec_B | 2e-13 | 260 | 329 | 143 | 212 | RECA |
2rec_C | 2e-13 | 260 | 329 | 143 | 212 | RECA |
2rec_D | 2e-13 | 260 | 329 | 143 | 212 | RECA |
2rec_E | 2e-13 | 260 | 329 | 143 | 212 | RECA |
2rec_F | 2e-13 | 260 | 329 | 143 | 212 | RECA |
4psa_A | 2e-13 | 260 | 329 | 143 | 212 | Protein RecA, 1st part, 2nd part |
4psk_A | 2e-13 | 260 | 329 | 143 | 212 | Protein RecA, 1st part, 2nd part |
4psv_A | 2e-13 | 260 | 329 | 143 | 212 | Protein RecA, 1st part, 2nd part |
4ptl_A | 2e-13 | 260 | 329 | 143 | 212 | Protein RecA, 1st part, 2nd part |
4twz_A | 2e-13 | 260 | 329 | 142 | 211 | Protein RecA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.FEY54 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX560966 | 6e-61 | JX560966.1 Stylosanthes guianensis SPX domain-containing protein 1 (SPX1) mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31220.1 | 3e-40 | bHLH family protein |