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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.FB5A8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | YABBY | ||||||||
Protein Properties | Length: 187aa MW: 20941.8 Da PI: 8.3382 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 226.6 | 6.7e-70 | 7 | 169 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl 101 + +eq+Cy+ CnfCn +lavsvP tslf +vtvrCGhCt+l svn+a a q l+ ++ ++ + +e + ++n+++n+ ++s+ ++ s Aradu.FB5A8 7 DAGPEQLCYIPCNFCNIVLAVSVPCTSLFDMVTVRCGHCTNLWSVNMAAAFQSLSWQDL---QGPGQCNQEYRI-DTNINMNNGGSSSKCNNSSRLAS 100 6679*********************************************9999999884...444445555554.55677776666665555555444 PP YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +++v++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Aradu.FB5A8 101 MRAPTNHVTQERAVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 169 5666778888899******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.0E-71 | 10 | 169 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.37E-8 | 114 | 163 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.3E-4 | 116 | 163 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MSSCSMDAGP EQLCYIPCNF CNIVLAVSVP CTSLFDMVTV RCGHCTNLWS VNMAAAFQSL 60 SWQDLQGPGQ CNQEYRIDTN INMNNGGSSS KCNNSSRLAS MRAPTNHVTQ ERAVNRPPEK 120 RQRVPSAYNQ FIKEEIQRIK ANNPDISHRE AFSTAAKNWA HFPHIHFGLM LEEKHLMSRA 180 APALLNK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.FB5A8 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015935977.1 | 1e-140 | axial regulator YABBY 5 isoform X2 | ||||
Swissprot | Q8GW46 | 6e-79 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A445EME8 | 1e-135 | A0A445EME8_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA17G12200.1 | 1e-111 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-78 | YABBY family protein |
Publications ? help Back to Top | |||
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