PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.F8VRL

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 382aa MW: 43048.6 Da PI: 7.8628

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.F8VRL	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.1	7.4e-36	47	189	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..........tksgy 82 lp+G++F+Ptd+el+ e+L++kve+k+ ++++ i+ +i++++P++Lp v+ + + +fF++ +++y+tg+rk+r+ + + Aradu.F8VRL 47 LPAGVKFDPTDQELI-EHLEAKVEAKRshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSRAYTTGTRKRRKilqndeaeaeRGETR 142 799**********.99***9986654443334666646******.555666799**************8799999886544778 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++v+ kg+++g+kk+Lv+y g+++k++kt+Wvmh+y+l Aradu.F8VRL 143 WHKTGKTRAVML-KGKQKGCKKILVLYtnFGKNRKPQKTNWVMHQYHL 189 ********.9999******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-38	42	208	IPR003441	NAC domain
PROSITE profile	PS51005	32.812	47	208	IPR003441	NAC domain
Pfam	PF02365	1.3E-16	48	189	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MNKMDLIDAK LQEEHQLCAS SWKQCPACGH KFEGSSGKKG EWEWVGLPAG VKFDPTDQEL 60 IEHLEAKVEA KRSHPLIDEF IPTIEGEDGI CYTHPEKLPG VTRDGLSRHF FHRPSRAYTT 120 GTRKRRKILQ NDEAEAERGE TRWHKTGKTR AVMLKGKQKG CKKILVLYTN FGKNRKPQKT 180 NWVMHQYHLG LHEEEKDGEL VVSKIFYQTQ PRQCSWSSSS SSSSITAAAP PVKTNNDTCP 240 VLGFPPMEHF SSFIPLRKTL HNENLFYLIG ETCTPASHIP SSNPLGVFHH NTSIILDDLI 300 SARFMTPPPP PHFHQQHDNK VVGGTSASGL EELIMGCTST STTHNITKEA SMTNTNPQEA 360 EWLKYSSYWA DPQPQPQPHL HG

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MNKMDLIDAK LQEEHQLCAS SWKQCPACGH KFEGSSGKKG EWEWVGLPAG VKFDPTDQEL  60
IEHLEAKVEA KRSHPLIDEF IPTIEGEDGI CYTHPEKLPG VTRDGLSRHF FHRPSRAYTT  120
GTRKRRKILQ NDEAEAERGE TRWHKTGKTR AVMLKGKQKG CKKILVLYTN FGKNRKPQKT  180
NWVMHQYHLG LHEEEKDGEL VVSKIFYQTQ PRQCSWSSSS SSSSITAAAP PVKTNNDTCP  240
VLGFPPMEHF SSFIPLRKTL HNENLFYLIG ETCTPASHIP SSNPLGVFHH NTSIILDDLI  300
SARFMTPPPP PHFHQQHDNK VVGGTSASGL EELIMGCTST STTHNITKEA SMTNTNPQEA  360
EWLKYSSYWA DPQPQPQPHL HG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.F8VRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC775372	5e-39	KC775372.1 Jatropha curcas NAC transcription factor 094 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016188768.1	0.0	NAC domain-containing protein 73-like isoform X5
Swissprot	Q9M0F8	1e-121	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A445A3G0	0.0	A0A445A3G0_ARAHY; Uncharacterized protein
STRING	GLYMA01G00880.1	1e-144	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF29449	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-119	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]