PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.F2TC9
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 374aa    MW: 44189.6 Da    PI: 9.4281
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.F2TC9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.57e-1627113191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY+ Y+k +GF ++++++++    ++i+++  vCs+eg+ +++ ++   + +t+++   +C a++ v+  k  g w ++k+ l+H+H+++p
  Aradu.F2TC9  27 KFYKYYSKLAGFFTKIKNTTQD--GDKIKNQLIVCSREGRWKSKISS---TLKTNPSAGLNCSARIYVQIIKdVGLWTISKVILNHSHPCCP 113
                  6***************987766..8889*************999877...999*****************9989***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-1327113IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.506268304IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MQTSCVVDEK FVPKVRIIFK TLEEARKFYK YYSKLAGFFT KIKNTTQDGD KIKNQLIVCS  60
REGRWKSKIS STLKTNPSAG LNCSARIYVQ IIKDVGLWTI SKVILNHSHP CCPDQAEMLK  120
QHRELISVWF AELYEDRHIW ISVYLDHHFW TGMRSTQRSE NMHSFFNKFI TRNSSLRQFM  180
KQYDNFLASR EQAEREFDAA DFHIVIPCTT KSAIEAQFQR VYTHEKFREV QAQFRGKVNC  240
ITRSMHFTLG FTTYEVIEQV SNSTFNKFVV TYDTVSQDVK CHCLLFESRG ILCHHSLSVL  300
SFEPVDNVAP KYILERWSKN RKRRHRHIKS SQDELVLEPR SKRFNELVFR SHNICEFASE  360
YEELTGILHR AFDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.F2TC9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025692433.11e-151protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A444ZLV20.0A0A444ZLV2_ARAHY; Uncharacterized protein
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.24e-33far-red elongated hypocotyls 3