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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.F2Q1Q | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | CPP | ||||||||
Protein Properties | Length: 528aa MW: 58642.3 Da PI: 6.5359 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 48.5 | 1.7e-15 | 389 | 428 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+CnCkkskClk+YCeCfaa+++C+ +C+C++C+Nk + Aradu.F2Q1Q 389 DCKRCNCKKSKCLKLYCECFAARTYCTGNCSCKNCHNKLD 428 689**********************************976 PP | |||||||
2 | TCR | 50.8 | 3.3e-16 | 470 | 509 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+C+kkYCeCf+ag+ Cs +C+C+ CkN+ Aradu.F2Q1Q 470 RHKRGCNCKKSSCQKKYCECFQAGVGCSINCRCDTCKNTF 509 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.2E-15 | 388 | 429 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.326 | 389 | 510 | IPR005172 | CRC domain |
Pfam | PF03638 | 4.4E-11 | 391 | 426 | IPR005172 | CRC domain |
SMART | SM01114 | 1.4E-14 | 470 | 511 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.7E-11 | 472 | 508 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence Send to blast |
DSPVFNFLNG LSPIKTEKPA QIGQTFSSLS FPSPPRAFAS PNLTSFKESK VLKRHNPFGK 60 SSDVAIADSF HPYHNSRESQ GNFHDGISAV DDSIALPGEH TNFSAEIPQA LKYNNWGNPG 120 YDPSHEDNSL DSIEVLNQES GEFDPKGQEL EHWDNLISGD TDFFVFNSPN EAAAFKDIMQ 180 KPDSHLMPLV PESSIYNGLS DDSKAKIEDY RPEPLAVTDQ MQDKHYVAMT SNTKEKADAE 240 FASVMNHSKR RRCLDFETAS VQRKNSDHNL KSDSLVHSNE KQLVAAKCNS SSQQCTMPAV 300 GLDLNALAAL KGDKKVISND NWPCEIHVNL PSCTSVQIYT SHEHHDPLAV EVDSSDIGPQ 360 PVEDSSHASD FTVDEDVNQN SPQKKTHGDC KRCNCKKSKC LKLYCECFAA RTYCTGNCSC 420 KNCHNKLDHK DEVLQARKQI ESRNPLAFTP KVIPEPEIGN DPNKTPAPSR HKRGCNCKKS 480 SCQKKYCECF QAGVGCSINC RCDTCKNTFG RKDGELSLLL QIKYKLNT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-17 | 391 | 507 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 2e-17 | 391 | 507 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.F2Q1Q |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025702743.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A445D793 | 0.0 | A0A445D793_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA01G44670.1 | 1e-160 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2619 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 2e-81 | TESMIN/TSO1-like CXC 2 |